Conservation of cofitness between Psyr_5016 and Psyr_1096 in Pseudomonas syringae pv. syringae B728a

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_5016 Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal 1.0 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.34 11
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_5016 Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal 1.00 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas putida KT2440 0.89 PP_0156 pyridine nucleotide transhydrogenase subunit alpha 0.80 PP_0988 glycine dehydrogenase low > 96
Pseudomonas sp. RS175 0.88 PFR28_04725 NAD(P) transhydrogenase subunit alpha part 1 0.85 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_4038 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.84 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 103
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_10860 NADP transhydrogenase subunit alpha 0.85 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_11090 NADP transhydrogenase subunit alpha 0.86 AO353_03500 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_556 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.85 PfGW456L13_1868 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 87
Pseudomonas simiae WCS417 0.86 PS417_00570 NADP transhydrogenase subunit alpha 0.84 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 88
Pseudomonas fluorescens SBW25 0.86 PFLU_RS00555 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.84 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS00555 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.84 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_1818 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.85 Pf1N1B4_621 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas sp. S08-1 0.85 OH686_11925 NAD(P) transhydrogenase N-domain of subunit alpha 0.59 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_4203 NAD/NADP transhydrogenase alpha subunit 0.58 Psest_0183 glycine dehydrogenase (decarboxylating) low > 67
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS17490 NADP transhydrogenase subunit alpha 0.62 RR42_RS20070 glycine dehydrogenase low > 128
Ralstonia solanacearum PSI07 0.75 RPSI07_RS11530 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.61 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) low > 81
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_04653 NAD(P) transhydrogenase subunit alpha 0.64 H281DRAFT_02409 glycine dehydrogenase low > 103
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS01340 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.61 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase low > 80
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS03370 NAD(P) transhydrogenase subunit alpha 0.64 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) low > 109
Ralstonia solanacearum GMI1000 0.74 RS_RS13660 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.60 RS_RS16510 glycine dehydrogenase low > 80
Paraburkholderia graminis OAS925 0.73 ABIE53_000812 NAD(P) transhydrogenase subunit alpha 0.64 ABIE53_000238 glycine dehydrogenase low > 113
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS26730 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.63 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase low > 153
Ralstonia solanacearum UW163 0.72 UW163_RS07855 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.61 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS05770 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.61 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) low > 76
Variovorax sp. OAS795 0.69 ABID97_RS11600 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.61 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10170 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.59 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase low > 48
Variovorax sp. SCN45 0.66 GFF4908 NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2) 0.60 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF2603 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) 0.58 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 90
Rhizobium sp. OAE497 0.47 ABIE40_RS16600 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.57 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase low > 107
Rhodopseudomonas palustris CGA009 0.46 TX73_021680 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha 0.58 TX73_019935 aminomethyl-transferring glycine dehydrogenase — —
Sinorhizobium meliloti 1021 0.46 SMc03950 proton-translocating nicotinamide nucleotide transhydrogenase subunit protein 0.58 SMc02049 glycine dehydrogenase low > 103
Shewanella loihica PV-4 0.44 Shew_0664 NAD(P) transhydrogenase subunit alpha (RefSeq) 0.56 Shew_3062 glycine dehydrogenase (RefSeq) low > 60
Dechlorosoma suillum PS 0.41 Dsui_2935 NAD/NADP transhydrogenase alpha subunit 0.57 Dsui_2737 glycine dehydrogenase, decarboxylating low > 51
Lysobacter sp. OAE881 0.41 ABIE51_RS05530 NAD(P) transhydrogenase subunit alpha 0.61 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase low > 62
Mycobacterium tuberculosis H37Rv 0.41 Rv0155 Probable NAD(P) transhydrogenase (subunit alpha) PntAa [first part; catalytic part] (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha) 0.53 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_10700 pntA NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha 0.61 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain low > 52
Alteromonas macleodii MIT1002 0.40 MIT1002_03909 NAD(P) transhydrogenase subunit alpha part 1 0.58 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.87 9
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS03850 NAD(P) transhydrogenase subunit alpha 0.61 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS03600 NAD(P) transhydrogenase subunit alpha 0.62 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS22145 NAD(P) transhydrogenase subunit alpha 0.63 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase low > 74
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_1612 pntA pyridine nucleotide transhydrogenase alpha subunit 0.56 Synpcc7942_2047 gcvP glycine dehydrogenase low > 38
Bacteroides ovatus ATCC 8483 0.15 BACOVA_04297 alanine dehydrogenase 0.50 BACOVA_04038 glycine dehydrogenase low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_0201 alanine dehydrogenase 0.54 Echvi_0744 glycine dehydrogenase (decarboxylating) low > 79
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS10690 alanine dehydrogenase 0.48 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase 0.43 31
Bacteroides thetaiotaomicron VPI-5482 0.14 BT1554 alanine dehydrogenase (NCBI ptt file) 0.48 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_04350 alanine dehydrogenase 0.55 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) low > 74
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS05025 alanine dehydrogenase 0.49 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase low > 67
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS18840 alanine dehydrogenase 0.49 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase low > 72
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS07210 alanine dehydrogenase 0.48 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase low > 61
Kangiella aquimarina DSM 16071 0.12 B158DRAFT_1823 alanine dehydrogenase 0.58 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) — —

Not shown: 14 genomes with orthologs for Psyr_5016 only; 36 genomes with orthologs for Psyr_1096 only