| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3863 | | SEC-C motif protein | 1.0 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.36 | 15 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3863 | | SEC-C motif protein | 1.00 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.84 | AO353_16995 | | hypothetical protein | 0.74 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pseudomonas simiae WCS417 | 0.84 | PS417_06485 | | hypothetical protein | 0.82 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_3187 | | UPF0225 protein YchJ | 0.78 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.82 | PFLU_RS06515 | | YchJ family protein | 0.78 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.82 | PFLU_RS06515 | | YchJ family protein | 0.78 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.60 | 6 |
| Pseudomonas fluorescens GW456-L13 | 0.82 | PfGW456L13_4631 | | UPF0225 protein YchJ | 0.82 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_00514 | | hypothetical protein | 0.76 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.80 | AO356_05460 | | hypothetical protein | 0.77 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.80 | Pf6N2E2_2949 | | UPF0225 protein YchJ | 0.75 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Pseudomonas putida KT2440 | 0.79 | PP_1119 | | conserved protein of unknown function | 0.75 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Pseudomonas sp. S08-1 | 0.76 | OH686_04855 | | UPF0225 protein YchJ | 0.75 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.74 | Psest_2861 | | Uncharacterized protein conserved in bacteria | 0.72 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS20310 | | hypothetical protein | 0.30 | AZOBR_RS01870 | | alanine racemase | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS17285 | | hypothetical protein | 0.50 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Magnetospirillum magneticum AMB-1 | 0.39 | AMB_RS00035 | | hypothetical protein | 0.29 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_00137 | | hypothetical protein | 0.50 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_02595 | | hypothetical protein | 0.47 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_0859 | | Uncharacterized protein conserved in bacteria | 0.49 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.37 | LU632_RS12935 | | YchJ family protein | 0.50 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.36 | DVU0242 | | SEC-C motif domain protein (TIGR) | 0.34 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | low | > 55 |
| Escherichia coli ECRC101 | 0.35 | MCAODC_21685 | ychJ | YchJ family protein | 0.50 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli BL21 | 0.35 | ECD_01209 | | UPF0225 family protein | 0.50 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_02452 | | hypothetical protein | 0.50 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.34 | 34 |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_27660 | ychJ | YchJ family protein | 0.50 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS07465 | | YchJ family protein | 0.50 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC62 | 0.35 | BNILDI_18630 | ychJ | YchJ family protein | 0.50 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_06000 | ychJ | YchJ family protein | 0.50 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli BW25113 | 0.35 | b1233 | ychJ | hypothetical protein (NCBI) | 0.50 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_25035 | ychJ | YchJ family protein | 0.50 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_28575 | ychJ | YchJ family protein | 0.50 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_20475 | ychJ | YchJ family protein | 0.50 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_25570 | ychJ | YchJ family protein | 0.50 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS11060 | | YchJ family protein | 0.53 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Escherichia fergusonii Becca | 0.34 | EFB2_02693 | | hypothetical protein | 0.50 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Serratia liquefaciens MT49 | 0.33 | IAI46_14260 | | YchJ family protein | 0.51 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Pantoea sp. MT58 | 0.33 | IAI47_09015 | | YchJ family protein | 0.51 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A1982 | | SEC-C domain protein (NCBI) | 0.34 | Rru_A1141 | | Protein of unknown function UPF0001 (NCBI) | low | > 58 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS10340 | | YchJ family protein | 0.52 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Dickeya dianthicola ME23 | 0.31 | DZA65_RS10815 | | YchJ family protein | 0.53 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Rahnella sp. WP5 | 0.31 | EX31_RS10110 | | YchJ family protein | 0.50 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_2228 | | SEC-C motif domain protein (RefSeq) | 0.38 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | low | > 51 |
| Dickeya dadantii 3937 | 0.30 | DDA3937_RS10330 | | YchJ family protein | 0.53 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.59 | 28 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_09275 | | hypothetical protein | 0.51 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | low | > 62 |
| Shewanella loihica PV-4 | 0.29 | Shew_2056 | | SecC motif-containing protein (RefSeq) | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.28 | B158DRAFT_1196 | | Uncharacterized protein conserved in bacteria | 0.46 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | low | > 40 |
| Shewanella sp. ANA-3 | 0.28 | Shewana3_2159 | | SecC motif-containing protein (RefSeq) | 0.50 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.27 | Sama_1820 | | metal-binding protein (RefSeq) | 0.49 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Dechlorosoma suillum PS | 0.27 | Dsui_2325 | | hypothetical protein | 0.55 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Shewanella oneidensis MR-1 | 0.26 | SO2497 | | conserved hypothetical protein (NCBI ptt file) | 0.51 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.26 | ABZR87_RS06285 | | YchJ family protein | 0.57 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_02092 | | SEC-C motif-containing protein | 0.56 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Variovorax sp. OAS795 | 0.25 | ABID97_RS25230 | | YchJ family metal-binding protein | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF1717 | | UPF0225 protein YchJ | 0.50 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 90 |
| Dyella japonica UNC79MFTsu3.2 | 0.24 | ABZR86_RS16820 | | YchJ family metal-binding protein | 0.31 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Lysobacter sp. OAE881 | 0.24 | ABIE51_RS00530 | | YchJ family protein | 0.44 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.22 | ABIE53_000587 | | SEC-C motif-containing protein | 0.58 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_02313 | | SEC-C motif | 0.50 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Herbaspirillum seropedicae SmR1 | 0.20 | HSERO_RS23450 | | hypothetical protein | 0.60 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
Not shown: 0 genomes with orthologs for Psyr_3863 only; 42 genomes with orthologs for Psyr_0477 only