Conservation of cofitness between Pf1N1B4_3491 and Pf1N1B4_1927 in Pseudomonas fluorescens FW300-N1B4

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 1.0 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.24 19
Pseudomonas fluorescens FW300-N2E3 0.99 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.99 AO353_10480 recombinase RecF 0.53 3
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.97 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas simiae WCS417 0.97 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.92 PS417_00015 recombinase RecF 0.24 35
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_3705 conserved hypothetical protein 0.94 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_3705 conserved hypothetical protein 0.94 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas fluorescens SBW25 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.96 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.96 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.99 AO356_11635 recombinase RecF 0.29 16
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.96 Pf6N2E2_4197 DNA recombination and repair protein RecF low > 103
Pseudomonas sp. RS175 0.96 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.98 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas putida KT2440 0.92 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.90 PP_0012 DNA replication and repair protein low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.78 Psest_0004 recF protein low > 67
Pseudomonas sp. S08-1 0.88 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.84 OH686_12620 DNA recombination and repair protein RecF low > 80
Shewanella amazonensis SB2B 0.72 Sama_1801 hypothetical protein (RefSeq) 0.41 Sama_0015 recF recombination protein F (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2354 conserved hypothetical protein (NCBI ptt file) 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_2154 tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) 0.32 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Erwinia tracheiphila SCR3 0.71 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 CSW01_00065 DNA replication and repair protein RecF low > 62
Escherichia coli ECRC99 0.70 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR27 0.70 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF low > 75
Escherichia coli ECOR38 0.70 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC62 0.70 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 BNILDI_04365 recF DNA replication/repair protein RecF low > 75
Escherichia coli ECRC102 0.70 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli BL21 0.70 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.38 ECD_03583 gap repair protein low > 61
Escherichia coli ECRC98 0.70 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF low > 86
Escherichia coli ECRC101 0.70 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 MCAODC_05535 recF DNA replication/repair protein RecF low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli ECRC100 0.70 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Dickeya dianthicola ME23 0.70 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dadantii 3937 0.70 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA 0.26 ABZR86_RS15145 DNA replication/repair protein RecF low > 74
Alteromonas macleodii MIT1002 0.70 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.36 MIT1002_00003 DNA replication and repair protein RecF low > 70
Escherichia coli Nissle 1917 0.70 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF — —
Dickeya dianthicola 67-19 0.70 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Escherichia coli BW25113 0.70 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.38 b3700 recF recombination protein F (NCBI) low > 76
Pantoea sp. MT58 0.70 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 IAI47_00015 DNA replication/repair protein RecF low > 76
Marinobacter adhaerens HP15 0.70 HP15_2116 PP-loop domain protein 0.36 HP15_3705 DNA replication and repair protein recF low > 73
Escherichia fergusonii Becca 0.70 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.38 EFB2_00003 DNA replication and repair protein RecF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.37 GFF1756 DNA recombination and repair protein RecF low > 78
Klebsiella michiganensis M5al 0.69 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.36 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Pectobacterium carotovorum WPP14 0.69 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 HER17_RS00015 DNA replication/repair protein RecF low > 75
Enterobacter asburiae PDN3 0.69 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Enterobacter sp. TBS_079 0.69 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.37 MPMX20_00003 DNA replication and repair protein RecF low > 85
Serratia liquefaciens MT49 0.69 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 IAI46_00015 DNA replication/repair protein RecF low > 86
Shewanella loihica PV-4 0.69 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.40 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Lysobacter sp. OAE881 0.68 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.25 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Rahnella sp. WP5 0.68 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 EX31_RS05975 DNA replication/repair protein RecF low > 89
Acinetobacter radioresistens SK82 0.65 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase 0.29 MPMX26_00003 DNA replication and repair protein RecF low > 36
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS10680 tRNA 2-thiocytidine(32) synthetase TtcA 0.27 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS10320 tRNA 2-thiocytidine(32) synthetase TtcA 0.27 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_13200 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.5211.1 tRNA(Cytosine32)-2-thiocytidine synthetase 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Rhizobium sp. OAE497 0.49 ABIE40_RS10230 tRNA 2-thiocytidine(32) synthetase TtcA 0.16 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Sinorhizobium meliloti 1021 0.48 SMc00534 C32 tRNA thiolase 0.13 SMc02863 recombination protein F low > 103
Phaeobacter inhibens DSM 17395 0.47 PGA1_c02110 tRNA 2-thiocytidine biosynthesis protein TtcA 0.11 PGA1_c00030 DNA replication and repair protein RecF low > 62
Agrobacterium fabrum C58 0.47 Atu1858 hypothetical protein 0.16 Atu0073 recF-like protein low > 89
Dinoroseobacter shibae DFL-12 0.46 Dshi_0330 PP-loop domain protein (RefSeq) 0.11 Dshi_3375 SMC domain protein (RefSeq) low > 64
Fusobacterium nucleatum SB010 0.28 HUW76_05920 tRNA 2-thiocytidine(32) synthetase TtcA 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Bacteroides ovatus ATCC 8483 0.22 BACOVA_05345 PP-loop family protein 0.18 BACOVA_05088 DNA replication and repair protein RecF low > 94
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS18325 adenine nucleotide alpha hydrolase family protein 0.16 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS13335 adenine nucleotide alpha hydrolase family protein 0.18 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS05785 adenine nucleotide alpha hydrolase family protein 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Bacteroides thetaiotaomicron VPI-5482 0.21 BT4558 conserved hypothetical protein (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13920 tRNA 2-thiocytidine biosynthesis TtcA family protein 0.17 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61

Not shown: 17 genomes with orthologs for Pf1N1B4_3491 only; 18 genomes with orthologs for Pf1N1B4_1927 only