| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0959 | | phospholipid ABC transporter | 1.0 | PP_5058 | | Carboxy-terminal-processing protease | 0.38 | 11 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.82 | Psyr_4887 | | Peptidase S41A, C-terminal protease | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.82 | Psyr_4887 | | Peptidase S41A, C-terminal protease | 0.29 | 65 |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_07000 | | ABC transporter permease | 0.82 | AO356_09780 | | peptidase S41 | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_3259 | | Uncharacterized ABC transporter, permease component YrbE | 0.82 | Pf6N2E2_3835 | | Carboxyl-terminal protease (EC 3.4.21.102) | — | — |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00180 | | Intermembrane phospholipid transport system permease protein MlaE | 0.83 | PFR28_04936 | | Carboxy-terminal processing protease CtpB | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_3306 | | conserved hypothetical integral membrane protein | 0.76 | Psest_0160 | | C-terminal peptidase (prc) | — | — |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08505 | | Phospholipid ABC transporter permease protein MlaE | 0.77 | OH686_14645 | | Carboxyl-terminal protease | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_5007 | | Uncharacterized ABC transporter, permease component YrbE | 0.85 | PfGW456L13_355 | | Carboxyl-terminal protease (EC 3.4.21.102) | — | — |
| Pseudomonas simiae WCS417 | 0.85 | PS417_04380 | | ABC transporter permease | 0.81 | PS417_01595 | | peptidase S41 | — | — |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.81 | PFLU_RS01645 | | S41 family peptidase | 0.79 | 55 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_05145 | | ABC transporter permease | 0.81 | AO353_12105 | | peptidase S41 | 0.41 | 38 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.81 | PFLU_RS01645 | | S41 family peptidase | 0.54 | 7 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_1073 | | Uncharacterized ABC transporter, permease component YrbE | 0.84 | Pf1N1B4_1619 | | Carboxyl-terminal protease (EC 3.4.21.102) | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_2435 | | ABC-type transport system involved in resistance to organic solvents, permease component | 0.54 | HP15_3007 | | carboxyl-terminal protease family protein | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_02740 | | Intermembrane phospholipid transport system permease protein MlaE | 0.22 | MPMX26_00161 | | putative CtpA-like serine protease | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_05642 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.41 | H281DRAFT_02005 | | carboxyl-terminal processing protease | — | — |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_003711 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.40 | ABIE53_000662 | | carboxyl-terminal processing protease | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS18965 | | ABC transporter permease | 0.40 | RR42_RS01820 | | peptidase S41 | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS02550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.39 | ABZR87_RS06745 | | S41 family peptidase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS14840 | | ABC transporter permease | 0.40 | RS_RS01735 | | S41 family peptidase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS06895 | | ABC transporter permease | 0.40 | RALBFv3_RS10895 | | S41 family peptidase | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS06720 | | ABC transporter permease | 0.40 | UW163_RS02685 | | S41 family peptidase | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS10340 | | ABC transporter permease | 0.40 | RPSI07_RS22415 | | S41 family peptidase | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS17760 | | ABC transporter permease | 0.41 | BPHYT_RS02585 | | peptidase S41 | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_1399 | | conserved hypothetical integral membrane protein | 0.46 | Dsui_1270 | | C-terminal processing peptidase | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF5335 | | Phospholipid ABC transporter permease protein MlaE | 0.40 | GFF2568 | | Carboxyl-terminal protease (EC 3.4.21.102) | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS23210 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.39 | ABID97_RS07380 | | S41 family peptidase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_4713 | | Uncharacterized ABC transporter, permease component YrbE | 0.40 | Ac3H11_3855 | | Carboxyl-terminal protease (EC 3.4.21.102) | — | — |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS11185 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.40 | ABCV34_RS14280 | | S41 family peptidase | — | — |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS11490 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.42 | LRK55_RS10655 | | S41 family peptidase | low | > 63 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS20395 | | ABC transporter permease | 0.43 | HSERO_RS00830 | | peptidase S41 | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS11765 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.42 | LRK54_RS10950 | | S41 family peptidase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS11880 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.41 | ABZR86_RS13350 | | S41 family peptidase | 0.57 | 33 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_12130 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.40 | OKGIIK_12920 | ctpA | C-terminal processing protease CtpA/Prc, contains a PDZ domain | low | > 52 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF1324 | | Uncharacterized ABC transporter, permease component YrbE | 0.38 | GFF1227 | | Carboxyl-terminal protease (EC 3.4.21.102) | low | > 90 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0852 | | protein of unknown function DUF140 (RefSeq) | 0.40 | DvMF_3158 | | carboxyl-terminal protease (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1246 | | membrane protein, putative (TIGR) | 0.39 | DVU2336 | | carboxyl-terminal protease (TIGR) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS10570 | | ABC transporter permease | 0.44 | AMB_RS01535 | | S41 family peptidase | — | — |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.40 | CCNA_03548 | | carboxy-terminal processing protease precursor | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.40 | CCNA_03548 | | carboxy-terminal processing protease precursor | low | > 67 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0408 | | Protein of unknown function DUF140 (NCBI) | 0.45 | Rru_A1232 | | C-terminal processing peptidase S41A (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c10870 | | conserved hypothetical integral membrane protein | 0.40 | PGA1_c02790 | | putative carboxy-terminal-processing protease | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_2379 | | protein of unknown function DUF140 (RefSeq) | 0.42 | Dshi_0091 | | carboxyl-terminal protease (RefSeq) | low | > 64 |
Not shown: 45 genomes with orthologs for PP_0959 only; 8 genomes with orthologs for PP_5058 only