Conservation of cofitness between PP_3118 and PP_4066 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3118 DNA linked enzyme involved in DNA repair 1.0 PP_4066 methylglutaconyl-CoA hydratase 0.18 15
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2086 DNA polymerase-like protein PA0670 0.76 Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) low > 103
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_22710 DNA repair nucleotidyltransferase 0.79 AO353_20340 gamma-carboxygeranoyl-CoA hydratase low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21815 DNA repair nucleotidyltransferase 0.76 AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) low > 104
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_5680 DNA polymerase-like protein PA0670 0.79 Pf1N1B4_3985 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) low > 87
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_2821 DNA polymerase-like protein PA0670 0.79 PfGW456L13_2589 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) low > 87
Pseudomonas sp. RS175 0.63 PFR28_01354 Protein ImuB 0.76 PFR28_01258 1,4-dihydroxy-2-naphthoyl-CoA synthase low > 88
Pseudomonas simiae WCS417 0.62 PS417_15585 DNA repair nucleotidyltransferase 0.80 PS417_17025 gamma-carboxygeranoyl-CoA hydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_2522 conserved hypothetical protein 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase low > 86
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_2522 conserved hypothetical protein 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase low > 86
Pseudomonas stutzeri RCH2 0.61 Psest_1979 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.69 Psest_1082 Enoyl-CoA hydratase/carnithine racemase low > 67
Pseudomonas fluorescens SBW25 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase low > 109
Pseudomonas sp. S08-1 0.55 OH686_02405 DNA polymerase IV-like protein ImuB 0.76 OH686_00845 Methylglutaconyl-CoA hydratase low > 80
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS18205 DNA polymerase Y family protein 0.35 ABZR86_RS20610 enoyl-CoA hydratase-related protein — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3896.1 hypothetical protein 0.30 Xcc-8004.2922.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS11845 DNA polymerase Y family protein 0.36 ABIE51_RS13190 enoyl-CoA hydratase-related protein — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00240 DNA polymerase Y family protein 0.34 LRK54_RS02275 enoyl-CoA hydratase-related protein low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS18140 DNA polymerase Y family protein 0.35 LRK55_RS02030 enoyl-CoA hydratase-related protein — —
Marinobacter adhaerens HP15 0.25 HP15_1334 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.38 HP15_4180 enoyl-CoA hydratase/isomerase low > 73
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS43590 DNA polymerase Y family protein 0.38 QEN71_RS12860 enoyl-CoA hydratase/isomerase family protein low > 153
Dechlorosoma suillum PS 0.17 Dsui_2266 nucleotidyltransferase/DNA polymerase involved in DNA repair 0.40 Dsui_0981 enoyl-CoA hydratase/carnithine racemase — —
Paraburkholderia graminis OAS925 0.15 ABIE53_000205 protein ImuB 0.37 ABIE53_005467 methylglutaconyl-CoA hydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_04986 protein ImuB 0.37 H281DRAFT_01344 methylglutaconyl-CoA hydratase — —
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS32800 nucleotidyltransferase 0.38 RR42_RS26900 enoyl-CoA hydratase low > 128
Ralstonia solanacearum GMI1000 0.14 RS_RS20935 DNA polymerase Y family protein 0.39 RS_RS01310 enoyl-CoA hydratase 0.40 12
Hydrogenophaga sp. GW460-11-11-14-LB1 0.13 GFF4008 DNA polymerase-like protein PA0670 0.39 GFF1713 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) low > 90
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS11285 DNA polymerase 0.42 HSERO_RS15435 enoyl-CoA hydratase low > 78
Dinoroseobacter shibae DFL-12 0.13 Dshi_3997 hypothetical protein (RefSeq) 0.32 Dshi_1304 Enoyl-CoA hydratase/isomerase (RefSeq) low > 64
Ralstonia solanacearum PSI07 0.13 RPSI07_RS03295 DNA polymerase Y family protein 0.40 RPSI07_RS22845 enoyl-CoA hydratase low > 81
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS20565 DNA polymerase Y family protein 0.38 ABZR87_RS06270 enoyl-CoA hydratase/isomerase family protein low > 80
Sinorhizobium meliloti 1021 0.12 SMc03789 hypothetical protein 0.31 SM_b21126 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) low > 103
Alteromonas macleodii MIT1002 0.12 MIT1002_00041 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.46 MIT1002_01667 putative enoyl-CoA hydratase echA8 low > 70
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS20505 nucleotidyltransferase 0.25 CA265_RS09125 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) low > 88
Ralstonia solanacearum UW163 0.11 UW163_RS19255 DNA polymerase Y family protein 0.40 UW163_RS03110 enoyl-CoA hydratase — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS19920 DNA polymerase Y family protein 0.40 RALBFv3_RS10470 enoyl-CoA hydratase low > 76
Variovorax sp. SCN45 0.11 GFF679 DNA polymerase-like protein PA0670 0.36 GFF2010 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) low > 127
Phaeobacter inhibens DSM 17395 0.10 PGA1_c00330 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.34 PGA1_c10360 putative enoyl-CoA hydratase — —
Caulobacter crescentus NA1000 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.34 CCNA_02251 methylglutaconyl-CoA hydratase — —
Caulobacter crescentus NA1000 Δfur 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.34 CCNA_02251 methylglutaconyl-CoA hydratase low > 67
Variovorax sp. OAS795 0.10 ABID97_RS19220 DNA polymerase Y family protein 0.37 ABID97_RS25125 enoyl-CoA hydratase/isomerase family protein low > 91
Azospirillum sp. SherDot2 0.09 MPMX19_00258 Protein ImuB 0.43 MPMX19_03939 Enoyl-CoA-hydratase low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS05690 DNA polymerase Y family protein 0.34 A4249_RS03800 enoyl-CoA hydratase-related protein — —
Magnetospirillum magneticum AMB-1 0.08 AMB_RS15105 DNA polymerase Y family protein 0.41 AMB_RS03470 enoyl-CoA hydratase — —
Rhodopseudomonas palustris CGA009 0.07 TX73_009270 DNA polymerase Y family protein 0.24 TX73_011065 enoyl-CoA hydratase/isomerase family protein 0.28 82
Acidovorax sp. GW101-3H11 0.07 Ac3H11_4194 DNA polymerase-like protein PA0670 0.35 Ac3H11_3014 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) — —
Agrobacterium fabrum C58 0.07 Atu3229 hypothetical protein 0.22 Atu3481 enoyl-CoA hydratase low > 89

Not shown: 3 genomes with orthologs for PP_3118 only; 14 genomes with orthologs for PP_4066 only