| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0185 | | Positive alginate biosynthesis regulatory protein | 1.0 | PP_4011 | | isocitrate dehydrogenase, NADP(+)-specific | 0.33 | 5 |
| Pseudomonas fluorescens FW300-N2E3 | 0.84 | AO353_08995 | | chemotaxis protein CheY | 0.92 | AO353_27690 | | isocitrate dehydrogenase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.82 | PfGW456L13_855 | | Autolysis response regulater LytR | 0.92 | PfGW456L13_2643 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.82 | Pf1N1B4_2184 | | Autolysis response regulater LytR | 0.92 | Pf1N1B4_4052 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | 0.32 | 69 |
| Pseudomonas fluorescens FW300-N2C3 | 0.81 | AO356_12785 | | chemotaxis protein CheY | 0.93 | AO356_22135 | | isocitrate dehydrogenase | low | > 104 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_04366 | | Sensory transduction protein LytR | 0.93 | PFR28_02616 | | Isocitrate dehydrogenase [NADP] | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_4430 | | Autolysis response regulater LytR | 0.93 | Pf6N2E2_289 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.79 | PFLU_RS29215 | | response regulator transcription factor | 0.93 | PFLU_RS18565 | | NADP-dependent isocitrate dehydrogenase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.79 | PS417_27535 | | chemotaxis protein CheY | 0.93 | PS417_16525 | | isocitrate dehydrogenase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.79 | PFLU_RS29215 | | response regulator transcription factor | 0.93 | PFLU_RS18565 | | NADP-dependent isocitrate dehydrogenase | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_3749 | | Response regulator of the LytR/AlgR family | 0.91 | Psest_2024 | | isocitrate dehydrogenase, NADP-dependent, prokaryotic type | low | > 67 |
| Pseudomonas sp. S08-1 | 0.76 | OH686_13895 | | Alginate biosynthesis two-component system response regulator AlgR | 0.93 | OH686_00220 | | isocitrate dehydrogenase, NADP-dependent | — | — |
| Acinetobacter radioresistens SK82 | 0.41 | MPMX26_00187 | | Transcriptional regulatory protein YpdB | 0.80 | MPMX26_01012 | | Isocitrate dehydrogenase [NADP] | low | > 36 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS02955 | | LytTR family DNA-binding domain-containing protein | 0.22 | ABIE51_RS14200 | | isocitrate dehydrogenase | — | — |
| Dechlorosoma suillum PS | 0.29 | Dsui_0109 | | response regulator of the LytR/AlgR family | 0.70 | Dsui_3296 | | isocitrate dehydrogenase, NADP-dependent, prokaryotic type | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF738 | | Autolysis response regulater LytR | 0.71 | GFF4515 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_1634 | | Response regulator receiver:LytTr DNA-binding region | 0.77 | Ac3H11_2377 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | low | > 79 |
| Variovorax sp. OAS795 | 0.24 | ABID97_RS08200 | | LytTR family DNA-binding domain-containing protein | 0.80 | ABID97_RS16920 | | NADP-dependent isocitrate dehydrogenase | low | > 91 |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS11570 | | LytTR family DNA-binding domain-containing protein | 0.78 | ABZR87_RS00460 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS06780 | | DNA-binding response regulator | 0.78 | RS_RS12485 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS12225 | | LytR family transcriptional regulator | 0.79 | RR42_RS17135 | | isocitrate dehydrogenase | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS17365 | | DNA-binding response regulator | 0.79 | RPSI07_RS12425 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Ralstonia solanacearum UW163 | 0.20 | UW163_RS13450 | | DNA-binding response regulator | 0.78 | UW163_RS08770 | | isocitrate dehydrogenase (NADP(+)) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.20 | RALBFv3_RS00120 | | DNA-binding response regulator | 0.78 | RALBFv3_RS04855 | | isocitrate dehydrogenase (NADP(+)) | — | — |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_2594 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.22 | Shewana3_2890 | | isocitrate dehydrogenase (RefSeq) | — | — |
| Variovorax sp. SCN45 | 0.19 | GFF3826 | | Response regulator receiver:LytTr DNA-binding region | 0.79 | GFF343 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | low | > 127 |
| Alteromonas macleodii MIT1002 | 0.19 | MIT1002_01189 | | Transcriptional regulatory protein YehT | 0.22 | MIT1002_00983 | | Isocitrate dehydrogenase [NADP] | low | > 70 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS16465 | | two-component system response regulator BtsR | 0.78 | HGI48_RS11515 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Shewanella oneidensis MR-1 | 0.18 | SO2823 | | response regulator (NCBI ptt file) | 0.21 | SO1538 | | isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) | — | — |
| Dickeya dadantii 3937 | 0.18 | DDA3937_RS16365 | | two-component system response regulator BtsR | 0.78 | DDA3937_RS11470 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS17550 | | two-component system response regulator BtsR | 0.78 | DZA65_RS11850 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.18 | IAI46_23615 | | two-component system response regulator BtsR | 0.80 | IAI46_10460 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Enterobacter sp. TBS_079 | 0.18 | MPMX20_03092 | | Transcriptional regulatory protein BtsR | 0.78 | MPMX20_01820 | | Isocitrate dehydrogenase [NADP] | — | — |
| Herbaspirillum seropedicae SmR1 | 0.17 | HSERO_RS18060 | | LytR family transcriptional regulator | 0.76 | HSERO_RS07015 | | isocitrate dehydrogenase | low | > 78 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU0596 | lytR | DNA-binding response regulator LytR (TIGR) | 0.51 | DVU0477 | icd | isocitrate dehydrogenase, NADP-dependent (TIGR) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.17 | CA264_16125 | | DNA-binding response regulator | 0.21 | CA264_17775 | | isocitrate dehydrogenase | — | — |
| Escherichia fergusonii Becca | 0.17 | EFB2_01731 | | Transcriptional regulatory protein BtsR | 0.79 | EFB2_02839 | | Isocitrate dehydrogenase [NADP] | — | — |
| Escherichia coli ECOR27 | 0.17 | NOLOHH_15235 | btsR | two-component system response regulator BtsR | 0.79 | NOLOHH_20885 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.17 | OKFHMN_23915 | btsR | two-component system response regulator BtsR | 0.79 | OKFHMN_00760 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli ECRC99 | 0.17 | KEDOAH_04250 | btsR | two-component system response regulator BtsR | 0.79 | KEDOAH_24845 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli Nissle 1917 | 0.17 | ECOLIN_RS12450 | | two-component system response regulator BtsR | 0.79 | ECOLIN_RS06640 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.17 | OHPLBJKB_01586 | | Transcriptional regulatory protein BtsR | 0.79 | OHPLBJKB_02532 | | Isocitrate dehydrogenase [NADP] | — | — |
| Escherichia coli BW25113 | 0.17 | b2125 | yehT | orf, hypothetical protein (VIMSS) | 0.79 | b1136 | icd | isocitrate dehydrogenase (NCBI) | — | — |
| Escherichia coli ECRC98 | 0.17 | JDDGAC_28005 | btsR | two-component system response regulator BtsR | 0.79 | JDDGAC_06605 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli ECRC102 | 0.17 | NIAGMN_21850 | btsR | two-component system response regulator BtsR | 0.79 | NIAGMN_24905 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.17 | MCAODC_21245 | btsR | two-component system response regulator BtsR | 0.79 | MCAODC_22325 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli BL21 | 0.17 | ECD_02054 | | putative response regulator in two-component system withYehU | 0.79 | ECD_01134 | | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase | — | — |
| Enterobacter asburiae PDN3 | 0.17 | EX28DRAFT_0437 | | two component transcriptional regulator, LytTR family | 0.78 | EX28DRAFT_1794 | | isocitrate dehydrogenase (NADP) (EC 1.1.1.42) | — | — |
| Rahnella sp. WP5 | 0.17 | EX31_RS00780 | | two-component system response regulator BtsR | 0.79 | EX31_RS24590 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.17 | GFF3820 | | Two-component response-regulatory protein YehT | 0.79 | GFF3422 | | Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | — | — |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_02640 | btsR | two-component system response regulator BtsR | 0.79 | HEPCGN_24245 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Escherichia coli ECRC62 | 0.16 | BNILDI_14185 | btsR | two-component system response regulator BtsR | 0.79 | BNILDI_19050 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Erwinia tracheiphila SCR3 | 0.16 | LU632_RS20440 | btsR | two-component system response regulator BtsR | 0.78 | LU632_RS14560 | icd | NADP-dependent isocitrate dehydrogenase | — | — |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS19470 | | DNA-binding response regulator | 0.79 | BWI76_RS11330 | | isocitrate dehydrogenase (NADP(+)) | — | — |
| Pectobacterium carotovorum WPP14 | 0.16 | HER17_RS11565 | | LytTR family DNA-binding domain-containing protein | 0.78 | HER17_RS11610 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Shewanella amazonensis SB2B | 0.15 | Sama_1281 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.21 | Sama_2423 | | isocitrate dehydrogenase (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.15 | IAI47_05560 | | response regulator transcription factor | 0.79 | IAI47_11900 | | NADP-dependent isocitrate dehydrogenase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.15 | HMPREF1078_RS06285 | | LytTR family DNA-binding domain-containing protein | 0.53 | HMPREF1078_RS07510 | | NADP-dependent isocitrate dehydrogenase | low | > 61 |
| Bacteroides ovatus ATCC 8483 | 0.15 | BACOVA_02521 | | response regulator receiver domain protein | 0.57 | BACOVA_03311 | | dehydrogenase, isocitrate/isopropylmalate family | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.14 | BT1794 | | two-component system response regulator (NCBI ptt file) | 0.58 | BT2071 | | isocitrate dehydrogenase [NADP] (NCBI ptt file) | low | > 81 |
| Shewanella loihica PV-4 | 0.14 | Shew_2329 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.22 | Shew_2760 | | isocitrate dehydrogenase (RefSeq) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.13 | ABI39_RS12900 | | response regulator transcription factor | 0.54 | ABI39_RS09960 | | NADP-dependent isocitrate dehydrogenase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.13 | HMPREF1058_RS16980 | | response regulator transcription factor | 0.54 | HMPREF1058_RS14330 | | NADP-dependent isocitrate dehydrogenase | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.13 | DvMF_1224 | | two component transcriptional regulator, LytTR family (RefSeq) | 0.50 | DvMF_1739 | | isocitrate/isopropylmalate dehydrogenase (RefSeq) | — | — |
Not shown: 18 genomes with orthologs for PP_0185 only; 7 genomes with orthologs for PP_4011 only