Conservation of cofitness between PP_4697 and PP_4006 in Pseudomonas putida KT2440

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4697 poly(A) polymerase 1.0 PP_4006 Putative arginyl-tRNA--protein transferase 0.23 9
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.89 Pf6N2E2_294 Arginine-tRNA-protein transferase (EC 2.3.2.8) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16070 poly(A) polymerase 0.89 AO356_22160 arginyl-tRNA-protein transferase 0.40 2
Pseudomonas simiae WCS417 0.82 PS417_23900 poly(A) polymerase 0.89 PS417_16500 arginyl-tRNA-protein transferase low > 88
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.89 PfGW456L13_2648 Arginine-tRNA-protein transferase (EC 2.3.2.8) low > 87
Pseudomonas fluorescens SBW25 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.90 PFLU_RS18540 arginyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.90 PFLU_RS18540 arginyltransferase low > 109
Pseudomonas sp. RS175 0.82 PFR28_03719 Poly(A) polymerase I 0.90 PFR28_02611 Aspartate/glutamate leucyltransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_14395 poly(A) polymerase 0.89 AO353_27665 arginyl-tRNA-protein transferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0830 Poly(A) polymerase 0.86 Psyr_3181 Arginyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0830 Poly(A) polymerase 0.86 Psyr_3181 Arginyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.89 Pf1N1B4_4057 Arginine-tRNA-protein transferase (EC 2.3.2.8) low > 87
Pseudomonas sp. S08-1 0.71 OH686_17255 Poly(A) polymerase 0.85 OH686_00245 Arginyl-tRNA--protein transferase low > 80
Pseudomonas stutzeri RCH2 0.70 Psest_0998 poly(A) polymerase 0.81 Psest_2029 Putative arginyl-tRNA:protein arginylyltransferase low > 67
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.58 HP15_2078 arginyl-tRNA-protein transferase low > 73
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.34 CSW01_08720 arginyltransferase low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_03692 Poly(A) polymerase I precursor 0.39 MIT1002_01836 arginyl-tRNA-protein transferase low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.35 Shewana3_1755 arginyl-tRNA-protein transferase (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0058 poly(A) polymerase 0.45 B158DRAFT_1507 Putative arginyl-tRNA:protein arginylyltransferase low > 40
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26465 polynucleotide adenylyltransferase PcnB 0.42 QEN71_RS22760 arginyltransferase low > 153
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.38 Sama_2054 arginyl-tRNA-protein transferase (RefSeq) low > 62
Paraburkholderia graminis OAS925 0.43 ABIE53_000870 poly(A) polymerase 0.41 ABIE53_001955 arginyl-tRNA--protein-N-Asp/Glu arginylyltransferase low > 113
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.35 SO2624 hypothetical arginyl-tRNA:protein arginylyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_3131 poly(A) polymerase (RefSeq) 0.36 Shew_1568 arginyl-tRNA-protein transferase (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04706 poly(A) polymerase 0.41 H281DRAFT_00744 arginine-tRNA-protein transferase low > 103
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.41 BPHYT_RS08570 arginyl-tRNA-protein transferase low > 109
Lysobacter sp. OAE881 0.42 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.40 ABIE51_RS14510 arginyltransferase 0.59 6
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS17235 poly(A) polymerase 0.38 RR42_RS07470 arginyl-tRNA-protein transferase low > 128
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.41 RALBFv3_RS01590 arginyltransferase 0.74 7
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.42 OKGIIK_03400 ate1 arginyltransferase low > 52
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.43 LRK55_RS14270 arginyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.43 LRK54_RS14555 arginyltransferase low > 59
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.40 ABZR87_RS13385 arginyltransferase low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.42 RS_RS08135 arginyl-tRNA-protein transferase low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.41 RPSI07_RS15900 arginyltransferase low > 81
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.42 ABZR86_RS21260 arginyltransferase low > 74
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.33 ABCV34_RS07785 arginyltransferase low > 48
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS03145 poly(A) polymerase 0.41 HSERO_RS16150 arginyl-tRNA-protein transferase low > 78
Dechlorosoma suillum PS 0.40 Dsui_1515 poly(A) polymerase 0.41 Dsui_2973 putative arginyl-tRNA:protein arginylyltransferase low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.43 GFF4284 Arginine-tRNA-protein transferase (EC 2.3.2.8) low > 90
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.39 Ac3H11_533 Arginine-tRNA-protein transferase (EC 2.3.2.8) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00543 Poly(A) polymerase I 0.47 MPMX26_02427 Aspartate/glutamate leucyltransferase low > 36

Not shown: 25 genomes with orthologs for PP_4697 only; 18 genomes with orthologs for PP_4006 only