Conservation of cofitness between PP_0363 and PP_3417 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0363 8-amino-7-oxononanoate synthase 1.0 PP_3417 D-gluconate transporter 0.53 10
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4686 8-amino-7-oxononanoate synthase 0.83 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4686 8-amino-7-oxononanoate synthase 0.83 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_1148 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.74 PfGW456L13_1927 Gluconate permease low > 87
Pseudomonas sp. RS175 0.84 PFR28_04102 8-amino-7-oxononanoate synthase 0.75 PFR28_00595 High-affinity gluconate transporter low > 88
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_07520 8-amino-7-oxononanoate synthase 0.75 AO353_03245 permease DsdX low > 101
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4761 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.75 Pf6N2E2_2863 Gluconate permease low > 103
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_2488 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.74 Pf1N1B4_556 Gluconate permease low > 87
Pseudomonas fluorescens SBW25 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.77 PFLU_RS23585 GntP family permease 0.73 7
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.77 PFLU_RS23585 GntP family permease 0.41 33
Pseudomonas simiae WCS417 0.82 PS417_26000 8-amino-7-oxononanoate synthase 0.77 PS417_21980 permease DsdX 0.29 26
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_14140 8-amino-7-oxononanoate synthase 0.75 AO356_05055 permease DsdX low > 104
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS15835 8-amino-7-oxononanoate synthase 0.47 ABZR86_RS12640 gluconate:H+ symporter low > 74
Enterobacter sp. TBS_079 0.42 MPMX20_01404 8-amino-7-oxononanoate synthase 0.46 MPMX20_04302 High-affinity gluconate transporter low > 85
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2215 8-amino-7-oxononanoate synthase 0.45 EX28DRAFT_4127 gluconate transporter low > 76
Dickeya dianthicola 67-19 0.40 HGI48_RS08680 8-amino-7-oxononanoate synthase 0.45 HGI48_RS19890 gluconate transporter low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS08970 8-amino-7-oxononanoate synthase 0.45 DZA65_RS20960 gluconate transporter low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS08515 8-amino-7-oxononanoate synthase 0.44 DDA3937_RS19775 gluconate transporter low > 74
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS12245 8-amino-7-oxononanoate synthase 0.72 HSERO_RS05470 permease low > 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF672 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.44 GFF602 High-affinity gluconate transporter GntT low > 78
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_05650 8-amino-7-oxononanoate synthase 0.25 CSW01_01470 permease low > 62
Pectobacterium carotovorum WPP14 0.38 HER17_RS13455 8-amino-7-oxononanoate synthase 0.28 HER17_RS00545 GntP family transporter low > 75
Erwinia tracheiphila SCR3 0.38 LU632_RS09135 bioF 8-amino-7-oxononanoate synthase 0.35 LU632_RS19170 gntU gluconate transporter — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS04135 8-amino-7-oxononanoate synthase 0.44 ECOLIN_RS19505 gluconate transporter — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02095 8-amino-7-oxononanoate synthase 0.52 H281DRAFT_04276 gluconate permease GntT low > 103
Escherichia fergusonii Becca 0.37 EFB2_03329 8-amino-7-oxononanoate synthase 0.44 EFB2_00413 High-affinity gluconate transporter low > 86
Rahnella sp. WP5 0.37 EX31_RS23700 8-amino-7-oxononanoate synthase 0.42 EX31_RS05050 gluconate transporter low > 89
Paraburkholderia graminis OAS925 0.37 ABIE53_000579 8-amino-7-oxononanoate synthase 0.52 ABIE53_003515 GntP family gluconate:H+ symporter low > 113
Escherichia coli ECRC62 0.37 BNILDI_21035 bioF 8-amino-7-oxononanoate synthase 0.44 BNILDI_02745 gntT gluconate transporter — —
Escherichia coli ECRC98 0.37 JDDGAC_10030 bioF 8-amino-7-oxononanoate synthase 0.44 JDDGAC_20615 gntT gluconate transporter — —
Escherichia coli ECRC101 0.37 MCAODC_25610 bioF 8-amino-7-oxononanoate synthase 0.44 MCAODC_07515 gntT gluconate transporter — —
Escherichia coli ECRC101 0.37 OKFHMN_06395 bioF 8-amino-7-oxononanoate synthase 0.44 OKFHMN_16985 gntT gluconate transporter — —
Escherichia coli ECRC102 0.37 NIAGMN_04440 bioF 8-amino-7-oxononanoate synthase 0.44 NIAGMN_14755 gntT gluconate transporter — —
Escherichia coli ECRC99 0.37 KEDOAH_21515 bioF 8-amino-7-oxononanoate synthase 0.44 KEDOAH_11155 gntT gluconate transporter — —
Escherichia coli BL21 0.36 ECD_00743 8-amino-7-oxononanoate synthase 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system low > 60
Escherichia coli BW25113 0.36 b0776 bioF 8-amino-7-oxononanoate synthase (NCBI) 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) low > 76
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01095 8-amino-7-oxononanoate synthase 0.53 QEN71_RS26910 GntP family permease — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_02937 8-amino-7-oxononanoate synthase 0.44 OHPLBJKB_00288 High-affinity gluconate transporter low > 73
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02160 8-amino-7-oxononanoate synthase 0.53 BPHYT_RS13375 permease — —
Escherichia coli ECOR27 0.36 NOLOHH_22765 bioF 8-amino-7-oxononanoate synthase 0.44 NOLOHH_08770 gntT gluconate transporter low > 57
Escherichia coli ECOR38 0.36 HEPCGN_01645 bioF 8-amino-7-oxononanoate synthase 0.44 HEPCGN_15795 gntT gluconate transporter low > 85
Serratia liquefaciens MT49 0.36 IAI46_06530 8-amino-7-oxononanoate synthase 0.44 IAI46_23960 gluconate transporter low > 86
Alteromonas macleodii MIT1002 0.36 MIT1002_01380 8-amino-7-oxononanoate synthase 0.38 MIT1002_03473 5-keto-D-gluconate transporter low > 70
Acidovorax sp. GW101-3H11 0.36 Ac3H11_3830 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.28 Ac3H11_3740 Gluconate permease low > 79
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00820 8-amino-7-oxononanoate synthase 0.52 RALBFv3_RS18165 permease low > 76
Ralstonia solanacearum UW163 0.35 UW163_RS14155 8-amino-7-oxononanoate synthase 0.52 UW163_RS20965 permease — —
Ralstonia solanacearum GMI1000 0.35 RS_RS07435 8-amino-7-oxononanoate synthase 0.53 RS_RS22870 permease low > 80
Shewanella oneidensis MR-1 0.35 SO2739 bioF 8-amino-7-oxononanoate synthase (NCBI ptt file) 0.22 SO1771 permease, GntP family (NCBI ptt file) low > 76
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS00930 8-amino-7-oxononanoate synthase 0.56 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) low > 128
Klebsiella michiganensis M5al 0.35 BWI76_RS08765 8-amino-7-oxononanoate synthase 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) low > 92
Ralstonia solanacearum PSI07 0.35 RPSI07_RS16700 8-amino-7-oxononanoate synthase 0.53 RPSI07_RS05470 permease low > 81
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS12340 8-amino-7-oxononanoate synthase 0.53 ABZR87_RS19095 gluconate:H+ symporter low > 80
Shewanella loihica PV-4 0.35 Shew_1720 8-amino-7-oxononanoate synthase (RefSeq) 0.23 Shew_2533 gluconate transporter (RefSeq) — —
Shewanella sp. ANA-3 0.34 Shewana3_2518 aminotransferase, class I and II (RefSeq) 0.21 Shewana3_2684 gluconate transporter (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS13580 8-amino-7-oxononanoate synthase 0.38 CA265_RS01125 gluconate permease low > 88
Pantoea sp. MT58 0.33 IAI47_13525 8-amino-7-oxononanoate synthase 0.45 IAI47_14085 gluconate transporter low > 76
Variovorax sp. SCN45 0.32 GFF144 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.44 GFF1885 Gluconate transporter family protein low > 127
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0145 2-amino-3-ketobutyrate coenzyme A ligase 0.39 Echvi_2089 gluconate transporter 0.23 61
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_3508 7-keto-8-aminopelargonate synthetase and related enzymes 0.53 Ga0059261_1667 gluconate permease GntT (TC 2.A.8.1.4) — —
Rhodospirillum rubrum S1H 0.26 Rru_A1146 5-aminolevulinic acid synthase (NCBI) 0.38 Rru_A3140 Gluconate transporter (NCBI) low > 58
Fusobacterium nucleatum SB010 0.23 HUW76_05725 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.26 HUW76_01945 GntP family permease low > 35

Not shown: 41 genomes with orthologs for PP_0363 only; 0 genomes with orthologs for PP_3417 only