Conservation of cofitness between PP_4066 and PP_3122 in Pseudomonas putida KT2440

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4066 methylglutaconyl-CoA hydratase 1.0 PP_3122 acetoacetyl CoA-transferase (subunit A) 0.29 10
Pseudomonas simiae WCS417 0.80 PS417_17025 gamma-carboxygeranoyl-CoA hydratase 0.81 PS417_10525 succinyl-CoA:3-ketoacid-CoA transferase
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.81 PFLU_RS10585 CoA transferase subunit A 0.23 66
Pseudomonas fluorescens SBW25 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.81 PFLU_RS10585 CoA transferase subunit A low > 109
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_3985 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.82 Pf1N1B4_5833 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) low > 87
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_20340 gamma-carboxygeranoyl-CoA hydratase 0.83 AO353_27935 succinyl-CoA--3-ketoacid-CoA transferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.85 Psyr_3237 3-oxoacid CoA-transferase low > 86
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.85 Psyr_3237 3-oxoacid CoA-transferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.84 AO356_21650 succinyl-CoA--3-ketoacid-CoA transferase 0.28 41
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.84 Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) 0.32 34
Pseudomonas sp. RS175 0.76 PFR28_01258 1,4-dihydroxy-2-naphthoyl-CoA synthase 0.83 PFR28_01325 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A 0.43 88
Pseudomonas stutzeri RCH2 0.69 Psest_1082 Enoyl-CoA hydratase/carnithine racemase 0.61 Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) 0.41 8
Alteromonas macleodii MIT1002 0.46 MIT1002_01667 putative enoyl-CoA hydratase echA8 0.81 MIT1002_02001 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A low > 70
Shewanella loihica PV-4 0.44 Shew_2572 enoyl-CoA hydratase/isomerase (RefSeq) 0.76 Shew_2575 3-oxoacid CoA-transferase, A subunit (RefSeq)
Shewanella amazonensis SB2B 0.43 Sama_1360 enoyl-CoA hydratase/isomerase (RefSeq) 0.77 Sama_0518 3-oxoacid CoA-transferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO1895 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) 0.76 SO1892 atoD acetate CoA-transferase, subunit A (NCBI ptt file) low > 76
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS15435 enoyl-CoA hydratase 0.58 HSERO_RS23190 succinyl-CoA:3-ketoacid-CoA transferase
Shewanella sp. ANA-3 0.42 Shewana3_1670 methylglutaconyl-CoA hydratase (RefSeq) 0.76 Shewana3_1667 3-oxoacid CoA-transferase, A subunit (RefSeq)
Acinetobacter radioresistens SK82 0.40 MPMX26_00630 2,3-dehydroadipyl-CoA hydratase 0.63 MPMX26_02380 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2508 Enoyl-CoA hydratase/carnithine racemase 0.71 B158DRAFT_2505 3-oxoacid CoA-transferase, A subunit
Ralstonia solanacearum PSI07 0.40 RPSI07_RS22845 enoyl-CoA hydratase 0.60 RPSI07_RS15660 CoA transferase subunit A low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10470 enoyl-CoA hydratase 0.61 RALBFv3_RS01830 CoA transferase subunit A low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS03110 enoyl-CoA hydratase 0.61 UW163_RS15140 CoA transferase subunit A
Ralstonia solanacearum GMI1000 0.39 RS_RS01310 enoyl-CoA hydratase 0.65 RS_RS07905 CoA transferase subunit A low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1713 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.56 GFF5197 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) low > 90
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS06270 enoyl-CoA hydratase/isomerase family protein 0.59 ABZR87_RS13770 CoA transferase subunit A low > 80
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS26900 enoyl-CoA hydratase 0.64 RR42_RS06555 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) 0.53 5
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS12860 enoyl-CoA hydratase/isomerase family protein 0.64 QEN71_RS05245 CoA transferase subunit A 0.63 19
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23270 enoyl-CoA hydratase 0.62 BPHYT_RS13675 succinyl-CoA:3-ketoacid-CoA transferase low > 109
Paraburkholderia graminis OAS925 0.37 ABIE53_005467 methylglutaconyl-CoA hydratase 0.59 ABIE53_002909 3-oxoacid CoA-transferase subunit A low > 113
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_01344 methylglutaconyl-CoA hydratase 0.58 H281DRAFT_04495 3-oxoacid CoA-transferase subunit A
Variovorax sp. OAS795 0.37 ABID97_RS25125 enoyl-CoA hydratase/isomerase family protein 0.60 ABID97_RS19440 CoA transferase subunit A 0.32 81
Lysobacter sp. OAE881 0.36 ABIE51_RS13190 enoyl-CoA hydratase-related protein 0.64 ABIE51_RS04380 CoA transferase subunit A
Variovorax sp. SCN45 0.36 GFF2010 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.60 GFF7371 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) low > 127
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3014 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.59 Ac3H11_132 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Phaeobacter inhibens DSM 17395 0.34 PGA1_c10360 putative enoyl-CoA hydratase 0.58 PGA1_c06210 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
Caulobacter crescentus NA1000 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.65 CCNA_00206 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.65 CCNA_00206 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS03800 enoyl-CoA hydratase-related protein 0.63 A4249_RS02960 CoA transferase subunit A
Dinoroseobacter shibae DFL-12 0.32 Dshi_1304 Enoyl-CoA hydratase/isomerase (RefSeq) 0.61 Dshi_1136 3-oxoacid CoA-transferase, A subunit (RefSeq) low > 64
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2922.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.63 Xcc-8004.4478.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) 0.53 14
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_10930 methylglutaconyl-CoA hydratase 0.65 CA264_04625 succinyl-CoA--3-ketoacid-CoA transferase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0343 Enoyl-CoA hydratase/carnithine racemase 0.63 Echvi_3272 3-oxoacid CoA-transferase, A subunit low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS09125 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.60 CA265_RS06305 succinyl-CoA--3-ketoacid-CoA transferase low > 88
Rhodopseudomonas palustris CGA009 0.24 TX73_011065 enoyl-CoA hydratase/isomerase family protein 0.59 TX73_021545 CoA transferase subunit A low > 86
Mycobacterium tuberculosis H37Rv 0.20 Rv0971c Probable enoyl-CoA hydratase EchA7 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) 0.55 Rv2504c Probable succinyl-CoA:3-ketoacid-coenzyme A transferase (alpha subunit) ScoA (3-oxo acid:CoA transferase) (OXCT A) (succinyl-CoA:3-oxoacid-coenzyme A transferase) low > 58

Not shown: 15 genomes with orthologs for PP_4066 only; 9 genomes with orthologs for PP_3122 only