Conservation of cofitness between PP_5146 and PP_2148 in Pseudomonas putida KT2440

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5146 RNA pyrophosphohydrolase 1.0 PP_2148 transcription-repair coupling factor 0.53 3
Pseudomonas fluorescens SBW25 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.99 PS417_26990 RNA pyrophosphohydrolase 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas sp. RS175 0.98 PFR28_04831 RNA pyrophosphohydrolase 0.89 PFR28_01123 Transcription-repair-coupling factor 0.26 78
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_10345 RNA pyrophosphohydrolase 0.89 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.89 Pf6N2E2_2278 Transcription-repair coupling factor 0.35 15
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.87 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas syringae pv. syringae B728a 0.98 Psyr_4843 NUDIX hydrolase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_08470 RNA pyrophosphohydrolase 0.89 AO353_00435 transcription-repair coupling factor 0.29 94
Pseudomonas syringae pv. syringae B728a ΔmexB 0.98 Psyr_4843 NUDIX hydrolase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas sp. S08-1 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase 0.84 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.85 Psest_1653 transcription-repair coupling factor (mfd) — —
Acinetobacter radioresistens SK82 0.71 MPMX26_00342 RNA pyrophosphohydrolase 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.54 EX28DRAFT_1816 transcription-repair coupling factor (mfd) — —
Escherichia coli BL21 0.70 ECD_02678 RNA pyrophosphohydrolase 0.55 ECD_01110 transcription-repair coupling factor — —
Escherichia fergusonii Becca 0.70 EFB2_01054 RNA pyrophosphohydrolase 0.55 EFB2_02861 Transcription-repair-coupling factor — —
Escherichia coli BW25113 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) 0.55 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase 0.55 OHPLBJKB_02552 Transcription-repair-coupling factor — —
Dickeya dianthicola ME23 0.70 DZA65_RS05295 RNA pyrophosphohydrolase 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Escherichia coli ECRC101 0.69 MCAODC_10525 rppH RNA pyrophosphohydrolase 0.55 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.69 OKFHMN_20000 rppH RNA pyrophosphohydrolase 0.55 OKFHMN_03470 mfd transcription-repair coupling factor — —
Dickeya dianthicola 67-19 0.69 HGI48_RS04955 RNA pyrophosphohydrolase 0.55 HGI48_RS13065 transcription-repair coupling factor — —
Escherichia coli ECOR27 0.69 NOLOHH_11885 rppH RNA pyrophosphohydrolase 0.55 NOLOHH_20995 mfd transcription-repair coupling factor — —
Escherichia coli ECRC99 0.69 KEDOAH_08130 rppH RNA pyrophosphohydrolase 0.55 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.69 NIAGMN_17770 rppH RNA pyrophosphohydrolase 0.55 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.69 BNILDI_10365 rppH RNA pyrophosphohydrolase 0.55 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.69 HEPCGN_19255 rppH RNA pyrophosphohydrolase 0.55 HEPCGN_24015 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 0.69 JDDGAC_23665 rppH RNA pyrophosphohydrolase 0.55 JDDGAC_07130 mfd transcription-repair coupling factor — —
Dickeya dadantii 3937 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 0.55 GFF3397 Transcription-repair coupling factor low > 78
Pectobacterium carotovorum WPP14 0.69 HER17_RS16585 RNA pyrophosphohydrolase 0.55 HER17_RS08775 transcription-repair coupling factor — —
Klebsiella michiganensis M5al 0.69 BWI76_RS23275 RNA pyrophosphohydrolase 0.55 BWI76_RS11205 transcription-repair coupling factor — —
Pantoea sp. MT58 0.69 IAI47_03915 RNA pyrophosphohydrolase 0.55 IAI47_11975 transcription-repair coupling factor low > 76
Erwinia tracheiphila SCR3 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase 0.54 LU632_RS14730 mfd transcription-repair coupling factor — —
Serratia liquefaciens MT49 0.69 IAI46_20455 RNA pyrophosphohydrolase 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Rahnella sp. WP5 0.68 EX31_RS13205 RNA pyrophosphohydrolase 0.55 EX31_RS24520 transcription-repair coupling factor — —
Shewanella amazonensis SB2B 0.67 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) — —
Shewanella loihica PV-4 0.67 Shew_1038 dinucleoside polyphosphate hydrolase (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00647 RNA pyrophosphohydrolase 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Shewanella oneidensis MR-1 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS09330 RNA pyrophosphohydrolase 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS08860 RNA pyrophosphohydrolase 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS13805 RNA pyrophosphohydrolase 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_15860 RNA pyrophosphohydrolase 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Enterobacter sp. TBS_079 0.60 MPMX20_03693 RNA pyrophosphohydrolase 0.54 MPMX20_01795 Transcription-repair-coupling factor — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase 0.47 ABCV34_RS08660 transcription-repair coupling factor 0.93 7
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS01825 RNA pyrophosphohydrolase 0.49 HSERO_RS15180 transcription-repair coupling factor low > 78
Dechlorosoma suillum PS 0.51 Dsui_1325 ADP-ribose pyrophosphatase 0.48 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Phaeobacter inhibens DSM 17395 0.36 PGA1_c29090 RNA pyrophosphohydrolase RppH 0.33 PGA1_c14920 transcription-repair-coupling factor Mfd — —
Rhodospirillum rubrum S1H 0.34 Rru_A1230 NUDIX hydrolase (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Azospirillum sp. SherDot2 0.34 MPMX19_01945 RNA pyrophosphohydrolase 0.33 MPMX19_00876 Transcription-repair-coupling factor low > 112
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_4001 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Magnetospirillum magneticum AMB-1 0.31 AMB_RS01525 RNA pyrophosphohydrolase 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Bosea sp. OAE506 0.30 ABIE41_RS07545 RNA pyrophosphohydrolase 0.33 ABIE41_RS15825 transcription-repair coupling factor — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_0092 NUDIX hydrolase (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Rhizobium sp. OAE497 0.29 ABIE40_RS18985 RNA pyrophosphohydrolase 0.32 ABIE40_RS09310 transcription-repair coupling factor low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12500 RNA pyrophosphohydrolase 0.34 A4249_RS04775 transcription-repair coupling factor — —
Rhodopseudomonas palustris CGA009 0.28 TX73_000905 RNA pyrophosphohydrolase 0.33 TX73_013805 transcription-repair coupling factor low > 86
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_03553 diadenosine tetraphosphate (Ap4A) hydrolase 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Caulobacter crescentus NA1000 0.27 CCNA_03553 diadenosine tetraphosphate (Ap4A) hydrolase 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Agrobacterium fabrum C58 0.26 Atu2772 Invasion protein A 0.33 Atu1778 transcription-repair coupling factor low > 89
Sinorhizobium meliloti 1021 0.26 SMc03785 dinucleoside polyphosphate hydrolase 0.32 SMc04450 transcription-repair coupling factor low > 103

Not shown: 2 genomes with orthologs for PP_5146 only; 23 genomes with orthologs for PP_2148 only