Conservation of cofitness between PP_0246 and PP_1320 in Pseudomonas putida KT2440

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0246 two-component system DNA-binding response transcriptional dual regulator 1.0 PP_1320 stringent starvation protein A 0.31 4
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_1772 Two-component system response regulator OmpR 0.80 Pf1N1B4_959 Stringent starvation protein A — —
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_11745 chemotaxis protein CheY 0.81 AO353_15260 stringent starvation protein A — —
Pseudomonas simiae WCS417 0.92 PS417_01170 chemotaxis protein CheY 0.81 PS417_04170 stringent starvation protein A — —
Pseudomonas sp. RS175 0.92 PFR28_04868 Transcriptional regulatory protein OmpR 0.80 PFR28_03603 Stringent starvation protein A 0.23 38
Pseudomonas fluorescens SBW25 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.81 PFLU_RS04210 stringent starvation protein A — —
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS01280 two-component system response regulator OmpR 0.81 PFLU_RS04210 stringent starvation protein A — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_427 Two-component system response regulator OmpR 0.81 PfGW456L13_1637 Stringent starvation protein A low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_10170 chemotaxis protein CheY 0.80 AO356_17080 stringent starvation protein A low > 104
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3905 Two-component system response regulator OmpR 0.80 Pf6N2E2_5340 Stringent starvation protein A — —
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0258 Two-component response regulator OmpR 0.81 Psyr_4118 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0258 Two-component response regulator OmpR 0.81 Psyr_4118 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal — —
Pseudomonas sp. S08-1 0.84 OH686_11095 Two-component system response regulator OmpR 0.78 OH686_08375 Stringent starvation protein A low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_3995 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.81 Psest_3276 Glutathione S-transferase — —
Shewanella loihica PV-4 0.69 Shew_3637 ompR osmolarity response regulator (RefSeq) 0.56 Shew_0573 sspA stringent starvation protein A (RefSeq) — —
Shewanella sp. ANA-3 0.69 Shewana3_4017 ompR osmolarity response regulator (RefSeq) 0.55 Shewana3_0604 sspA stringent starvation protein A (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_13695 two-component system response regulator OmpR 0.54 CSW01_03060 stringent starvation protein A — —
Shewanella oneidensis MR-1 0.69 SO4633 ompR transcriptional regulatory protein OmpR (NCBI ptt file) 0.54 SO0611 sspA stringent starvation protein a (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.68 Sama_3510 ompR osmolarity response regulator (RefSeq) 0.54 Sama_3018 sspA stringent starvation protein A (RefSeq) low > 62
Serratia liquefaciens MT49 0.67 IAI46_23790 two-component system response regulator OmpR 0.52 IAI46_22365 stringent starvation protein A low > 86
Alteromonas macleodii MIT1002 0.67 MIT1002_03968 Transcriptional regulatory protein OmpR 0.53 MIT1002_00817 Stringent starvation protein A — —
Rahnella sp. WP5 0.67 EX31_RS04800 two-component system response regulator OmpR 0.53 EX31_RS12500 stringent starvation protein A 0.28 65
Dickeya dadantii 3937 0.67 DDA3937_RS19620 two-component system response regulator OmpR 0.58 DDA3937_RS01645 stringent starvation protein A low > 74
Dickeya dianthicola 67-19 0.67 HGI48_RS19750 two-component system response regulator OmpR 0.58 HGI48_RS01545 stringent starvation protein A low > 71
Escherichia coli ECRC101 0.67 OKFHMN_17035 ompR_G63V two-component system response regulator OmpR 0.53 OKFHMN_17830 sspA stringent starvation protein A — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS19455 two-component system response regulator OmpR 0.53 ECOLIN_RS18520 stringent starvation protein SspA low > 52
Escherichia coli BW25113 0.67 b3405 ompR osmolarity response regulator (NCBI) 0.53 b3229 sspA stringent starvation protein A (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF613 Two-component system response regulator OmpR 0.53 GFF2968 Stringent starvation protein A low > 78
Escherichia fergusonii Becca 0.67 EFB2_00423 Transcriptional regulatory protein OmpR 0.53 EFB2_00601 Stringent starvation protein A low > 86
Pantoea sp. MT58 0.67 IAI47_01820 two-component system response regulator OmpR 0.54 IAI47_17235 stringent starvation protein A 0.43 12
Escherichia coli ECRC101 0.67 MCAODC_07565 ompR_G63V two-component system response regulator OmpR 0.53 MCAODC_08350 sspA stringent starvation protein A — —
Escherichia coli ECRC102 0.67 NIAGMN_14805 ompR_G63V two-component system response regulator OmpR 0.53 NIAGMN_15590 sspA stringent starvation protein A — —
Escherichia coli ECRC62 0.67 BNILDI_02695 ompR_G63V two-component system response regulator OmpR 0.53 BNILDI_01905 sspA stringent starvation protein A — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS01700 two-component system response regulator OmpR 0.57 HER17_RS19935 stringent starvation protein A low > 75
Escherichia coli ECRC98 0.67 JDDGAC_20665 ompR_G63V two-component system response regulator OmpR 0.53 JDDGAC_21455 sspA stringent starvation protein A — —
Escherichia coli ECOR38 0.67 HEPCGN_15845 ompR_G63V two-component system response regulator OmpR 0.53 HEPCGN_16705 sspA stringent starvation protein A low > 85
Erwinia tracheiphila SCR3 0.67 LU632_RS22940 ompR two-component system response regulator OmpR 0.53 LU632_RS21330 sspA stringent starvation protein A — —
Escherichia coli ECOR27 0.67 NOLOHH_08825 ompR_G63V two-component system response regulator OmpR 0.53 NOLOHH_09630 sspA stringent starvation protein A low > 57
Enterobacter asburiae PDN3 0.67 EX28DRAFT_4138 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.52 EX28DRAFT_3278 Glutathione S-transferase low > 76
Dickeya dianthicola ME23 0.67 DZA65_RS20840 two-component system response regulator OmpR 0.58 DZA65_RS01615 stringent starvation protein A low > 75
Klebsiella michiganensis M5al 0.67 BWI76_RS26665 DNA-binding response regulator 0.52 BWI76_RS25335 stringent starvation protein A low > 92
Escherichia coli ECRC99 0.67 KEDOAH_11105 ompR_G63V two-component system response regulator OmpR 0.53 KEDOAH_10320 sspA stringent starvation protein A — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00298 Transcriptional regulatory protein OmpR 0.53 OHPLBJKB_00475 Stringent starvation protein A low > 73
Enterobacter sp. TBS_079 0.67 MPMX20_04292 Transcriptional regulatory protein OmpR 0.52 MPMX20_04133 Stringent starvation protein A low > 85
Escherichia coli BL21 0.67 ECD_03257 response regulator in two-component regulatory system with EnvZ 0.53 ECD_03089 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein low > 60
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0684 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.53 B158DRAFT_2103 Glutathione S-transferase low > 40
Acinetobacter radioresistens SK82 0.65 MPMX26_02838 Transcriptional regulatory protein OmpR 0.34 MPMX26_00591 Stringent starvation protein A low > 36
Variovorax sp. OAS795 0.59 ABID97_RS17265 two-component system response regulator OmpR 0.37 ABID97_RS22970 glutathione S-transferase N-terminal domain-containing protein — —
Variovorax sp. SCN45 0.59 GFF408 Two-component system response regulator OmpR 0.37 GFF6697 Stringent starvation protein A — —
Acidovorax sp. GW101-3H11 0.58 Ac3H11_343 Two-component system response regulator OmpR 0.37 Ac3H11_4753 Stringent starvation protein A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4930 Two-component system response regulator OmpR 0.38 GFF1292 Stringent starvation protein A — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS16070 two-component system response regulator OmpR 0.38 RPSI07_RS10520 transcription modulator protein — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS13210 two-component system response regulator OmpR 0.37 ABZR87_RS02370 glutathione S-transferase N-terminal domain-containing protein — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS01415 two-component system response regulator OmpR 0.38 RALBFv3_RS06715 stringent starvation protein A — —
Ralstonia solanacearum UW163 0.55 UW163_RS14725 two-component system response regulator OmpR 0.38 UW163_RS06900 stringent starvation protein A — —
Ralstonia solanacearum GMI1000 0.55 RS_RS08305 two-component system response regulator OmpR 0.38 RS_RS14660 transcription modulator protein — —
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00886 two component transcriptional regulator, winged helix family 0.38 H281DRAFT_05672 RNA polymerase-associated protein — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS07885 chemotaxis protein CheY 0.37 RR42_RS18810 stringent starvation protein A — —
Paraburkholderia graminis OAS925 0.55 ABIE53_002101 two-component system phosphate regulon response regulator OmpR 0.38 ABIE53_003682 RNA polymerase-associated protein — —
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08585 two-component system response regulator OmpR 0.37 ABCV34_RS12620 glutathione S-transferase N-terminal domain-containing protein — —
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS09315 chemotaxis protein CheY 0.38 BPHYT_RS17615 Glutathione S-transferase domain — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS22030 two-component system response regulator OmpR 0.38 QEN71_RS27770 glutathione S-transferase N-terminal domain-containing protein — —
Dechlorosoma suillum PS 0.54 Dsui_2401 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain 0.40 Dsui_1815 glutathione S-transferase — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10760 chemotaxis protein CheY 0.38 HSERO_RS20230 glutathione S-transferase — —

Not shown: 6 genomes with orthologs for PP_0246 only; 7 genomes with orthologs for PP_1320 only