Conservation of cofitness between PP_2152 and PP_0951 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2152 glycerophosphoryl diester phosphodiesterase 1.0 PP_0951 Ribosome hibernation promoting factor 0.32 1
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_00385 glycerophosphodiester phosphodiesterase 0.80 AO353_05185 hypothetical protein low > 101
Pseudomonas simiae WCS417 0.87 PS417_07655 glycerophosphodiester phosphodiesterase 0.83 PS417_04340 ribosome hibernation promoting factor HPF 0.24 1
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_3920 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas sp. RS175 0.87 PFR28_01128 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.80 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1902 Glycerophosphoryl diester phosphodiesterase 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1902 Glycerophosphoryl diester phosphodiesterase 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P — —
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_2273 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_02245 glycerophosphodiester phosphodiesterase 0.81 AO356_07040 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_4023 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas sp. S08-1 0.81 OH686_22010 Glycerophosphoryl diester phosphodiesterase 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_1664 Glycerophosphoryl diester phosphodiesterase 0.66 Psest_3314 ribosomal subunit interface protein low > 67
Marinobacter adhaerens HP15 0.38 HP15_2244 glycerophosphoryl diester phosphodiesterase 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Acinetobacter radioresistens SK82 0.23 MPMX26_02621 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.29 MPMX26_02591 Ribosome hibernation promoting factor — —
Pantoea sp. MT58 0.22 IAI47_01290 glycerophosphoryl diester phosphodiesterase 0.53 IAI47_17190 ribosome hibernation promoting factor low > 76
Klebsiella michiganensis M5al 0.21 BWI76_RS26285 glycerophosphodiester phosphodiesterase 0.51 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Variovorax sp. SCN45 0.21 GFF2533 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.45 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Pectobacterium carotovorum WPP14 0.21 HER17_RS00630 glycerophosphodiester phosphodiesterase 0.56 HER17_RS20065 ribosome hibernation promoting factor low > 75
Serratia liquefaciens MT49 0.21 IAI46_01010 glycerophosphodiester phosphodiesterase 0.55 IAI46_22475 ribosome hibernation promoting factor low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF1263 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.46 GFF2612 Ribosome hibernation protein YhbH low > 90
Rahnella sp. WP5 0.20 EX31_RS14740 glycerophosphodiester phosphodiesterase 0.58 EX31_RS12395 ribosome hibernation promoting factor low > 89
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4281 Glycerophosphoryl diester phosphodiesterase 0.52 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Paraburkholderia sabiae LMG 24235 0.20 QEN71_RS01340 glycerophosphodiester phosphodiesterase 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Enterobacter sp. TBS_079 0.20 MPMX20_04325 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.51 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS02485 membrane protein 0.41 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Escherichia coli BW25113 0.20 b3449 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase (NCBI) 0.53 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECRC98 0.19 JDDGAC_20420 ugpQ glycerophosphodiester phosphodiesterase 0.53 JDDGAC_21560 Ribosome hibernation promoting factor — —
Escherichia coli ECRC101 0.19 OKFHMN_16790 ugpQ glycerophosphodiester phosphodiesterase 0.53 OKFHMN_17935 Ribosome hibernation promoting factor — —
Escherichia coli ECRC99 0.19 KEDOAH_11350 ugpQ glycerophosphodiester phosphodiesterase 0.53 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECRC102 0.19 NIAGMN_14560 ugpQ glycerophosphodiester phosphodiesterase 0.53 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli BL21 0.19 ECD_03298 glycerophosphodiester phosphodiesterase, cytosolic 0.53 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 60
Escherichia fergusonii Becca 0.19 EFB2_00373 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.53 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC101 0.19 MCAODC_07320 ugpQ glycerophosphodiester phosphodiesterase 0.53 MCAODC_08455 Ribosome hibernation promoting factor — —
Kangiella aquimarina DSM 16071 0.19 B158DRAFT_1230 Glycerophosphoryl diester phosphodiesterase 0.59 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Acidovorax sp. GW101-3H11 0.19 Ac3H11_4784 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.46 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Ralstonia solanacearum UW163 0.19 UW163_RS13035 glycerophosphodiester phosphodiesterase 0.43 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.19 RALBFv3_RS15575 glycerophosphodiester phosphodiesterase 0.43 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00254 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.53 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Dickeya dianthicola ME23 0.19 DZA65_RS11295 glycerophosphoryl diester phosphodiesterase 0.51 DZA65_RS01505 ribosome hibernation promoting factor — —
Escherichia coli ECOR38 0.19 HEPCGN_15610 ugpQ glycerophosphodiester phosphodiesterase 0.53 HEPCGN_16810 Ribosome hibernation promoting factor low > 85
Dickeya dianthicola 67-19 0.19 HGI48_RS10830 glycerophosphoryl diester phosphodiesterase 0.51 HGI48_RS01440 ribosome hibernation promoting factor — —
Escherichia coli ECRC62 0.19 BNILDI_02925 ugpQ glycerophosphodiester phosphodiesterase 0.53 BNILDI_01800 Ribosome hibernation promoting factor — —
Cupriavidus basilensis FW507-4G11 0.19 RR42_RS12950 membrane protein 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Escherichia coli Nissle 1917 0.18 ECOLIN_RS19725 glycerophosphodiester phosphodiesterase 0.53 ECOLIN_RS18430 ribosome hibernation promoting factor low > 52
Dickeya dadantii 3937 0.18 DDA3937_RS10875 glycerophosphoryl diester phosphodiesterase 0.51 DDA3937_RS01525 ribosome hibernation promoting factor — —
Escherichia coli ECOR27 0.18 NOLOHH_08580 ugpQ glycerophosphodiester phosphodiesterase 0.53 NOLOHH_09735 Ribosome hibernation promoting factor low > 57
Ralstonia solanacearum PSI07 0.18 RPSI07_RS17780 glycerophosphodiester phosphodiesterase 0.44 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_02044 glycerophosphoryl diester phosphodiesterase 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF559 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.51 GFF2947 Ribosome hibernation protein YhbH low > 78
Ralstonia sp. UNC404CL21Col 0.17 ABZR87_RS11105 glycerophosphodiester phosphodiesterase 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Alteromonas macleodii MIT1002 0.17 MIT1002_00492 Glycerophosphoryl diester phosphodiesterase 0.60 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_07810 glycerophosphoryl diester phosphodiesterase 0.51 CSW01_12820 ribosome hibernation promoting factor low > 62
Paraburkholderia graminis OAS925 0.17 ABIE53_000641 glycerophosphoryl diester phosphodiesterase 0.41 ABIE53_000717 putative sigma-54 modulation protein low > 113
Shewanella amazonensis SB2B 0.16 Sama_3037 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Variovorax sp. OAS795 0.16 ABID97_RS07210 glycerophosphodiester phosphodiesterase 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Ralstonia solanacearum GMI1000 0.15 RS_RS06355 glycerophosphodiester phosphodiesterase 0.43 RS_RS02015 ribosomal subunit interface protein low > 80
Dechlorosoma suillum PS 0.13 Dsui_3366 glycerophosphoryl diester phosphodiesterase 0.52 Dsui_0703 ribosomal subunit interface protein low > 51
Shewanella loihica PV-4 0.13 Shew_0554 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Castellaniella sp019104865 MT123 0.13 ABCV34_RS03080 glycerophosphodiester phosphodiesterase 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA 0.64 18
Shewanella sp. ANA-3 0.12 Shewana3_0585 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Phocaeicola vulgatus CL09T03C04 0.11 HMPREF1058_RS11715 glycerophosphoryl diester phosphodiesterase 0.28 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA low > 67

Not shown: 12 genomes with orthologs for PP_2152 only; 12 genomes with orthologs for PP_0951 only