Conservation of cofitness between PP_1649 and PP_0872 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1649 D-lactate dehydrogenase 1.0 PP_0872 Peptide chain release factor 3 0.16 4
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_02740 hydroxyacid dehydrogenase 0.95 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) 0.93 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_3500 D-lactate dehydrogenase (EC 1.1.1.28) 0.77 Pf1N1B4_1130 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.79 AO356_19040 hydroxyacid dehydrogenase 0.95 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) 0.95 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas simiae WCS417 0.78 PS417_16375 2-hydroxyacid dehydrogenase 0.95 PS417_04030 peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.77 PFR28_03228 D-lactate dehydrogenase 0.95 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas stutzeri RCH2 0.69 Psest_4064 Lactate dehydrogenase and related dehydrogenases 0.94 Psest_3351 peptide chain release factor 3 low > 67
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS07830 2-hydroxyacid dehydrogenase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum UW163 0.68 UW163_RS05795 2-hydroxyacid dehydrogenase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Pseudomonas sp. S08-1 0.68 OH686_18940 D-lactate dehydrogenase 0.92 OH686_08765 peptide chain release factor 3 — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS03505 2-hydroxyacid dehydrogenase 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS03835 D-lactate dehydrogenase 0.54 BPHYT_RS34275 peptide chain release factor 3 low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04746 D-lactate dehydrogenase 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Ralstonia solanacearum GMI1000 0.66 RS_RS15730 2-hydroxyacid dehydrogenase 0.60 RS_RS25080 peptide chain release factor 3 low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS26130 2-hydroxyacid dehydrogenase 0.53 QEN71_RS17200 peptide chain release factor 3 low > 153
Paraburkholderia graminis OAS925 0.65 ABIE53_000908 D-lactate dehydrogenase 0.54 ABIE53_004717 peptide chain release factor 3 low > 113
Ralstonia solanacearum PSI07 0.64 RPSI07_RS09445 2-hydroxyacid dehydrogenase 0.60 RPSI07_RS07810 peptide chain release factor 3 low > 81
Agrobacterium fabrum C58 0.56 Atu3870 D-lactate dehydrogenase 0.48 Atu0315 peptide chain release factor 3 — —
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_14945 2-hydroxyacid dehydrogenase 0.69 CSW01_03470 peptide chain release factor 3 low > 62
Shewanella amazonensis SB2B 0.55 Sama_0612 D-lactate dehydrogenase (RefSeq) 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Shewanella sp. ANA-3 0.54 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_1347 ldhA 2-hydroxyacid dehydrogenase-like 0.42 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Shewanella loihica PV-4 0.54 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS12550 D-lactate dehydrogenase 0.64 HSERO_RS14640 peptide chain release factor 3 low > 78
Klebsiella michiganensis M5al 0.52 BWI76_RS12790 lactate dehydrogenase 0.68 BWI76_RS04100 peptide chain release factor 3 low > 92
Escherichia coli BW25113 0.52 b1380 ldhA D-lactate dehydrogenase (NCBI) 0.67 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli ECOR38 0.52 HEPCGN_26050 ldhA D-lactate dehydrogenase 0.67 HEPCGN_09285 prfC peptide chain release factor 3 low > 85
Escherichia coli ECOR27 0.52 NOLOHH_19530 ldhA D-lactate dehydrogenase 0.67 NOLOHH_03600 prfC peptide chain release factor 3 low > 57
Escherichia coli ECRC101 0.51 OKFHMN_01795 ldhA D-lactate dehydrogenase 0.67 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.51 EFB2_02576 D-lactate dehydrogenase 0.67 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC99 0.51 KEDOAH_26640 ldhA D-lactate dehydrogenase 0.67 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC62 0.51 BNILDI_17985 ldhA D-lactate dehydrogenase 0.67 BNILDI_08000 prfC peptide chain release factor 3 — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS08110 D-lactate dehydrogenase 0.67 ECOLIN_RS25110 peptide chain release factor 3 low > 52
Escherichia coli ECRC98 0.51 JDDGAC_04285 ldhA D-lactate dehydrogenase 0.67 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 0.51 NIAGMN_25930 ldhA D-lactate dehydrogenase 0.67 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia coli BL21 0.51 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.67 ECD_04250 peptide chain release factor RF-3 low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_02331 D-lactate dehydrogenase 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Escherichia coli ECRC101 0.51 MCAODC_16140 ldhA D-lactate dehydrogenase 0.67 MCAODC_01795 prfC peptide chain release factor 3 — —
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS10420 hydroxyacid dehydrogenase 0.46 CA265_RS18435 peptide chain release factor 3 0.41 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) 0.68 GFF1035 Peptide chain release factor 3 low > 78
Pantoea sp. MT58 0.51 IAI47_09495 2-hydroxyacid dehydrogenase 0.69 IAI47_03375 peptide chain release factor 3 low > 76
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_0219 Lactate dehydrogenase and related dehydrogenases 0.45 Ga0059261_2044 peptide chain release factor 3 low > 68
Enterobacter sp. TBS_079 0.50 MPMX20_02132 D-lactate dehydrogenase 0.68 MPMX20_00673 Peptide chain release factor RF3 low > 85
Enterobacter asburiae PDN3 0.50 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases 0.68 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Alteromonas macleodii MIT1002 0.50 MIT1002_01974 D-lactate dehydrogenase 0.68 MIT1002_01192 Peptide chain release factor 3 low > 70
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_3161 Lactate dehydrogenase and related dehydrogenases 0.50 Echvi_0584 peptide chain release factor 3 0.30 36
Serratia liquefaciens MT49 0.50 IAI46_13355 2-hydroxyacid dehydrogenase 0.68 IAI46_02875 peptide chain release factor 3 low > 86
Rahnella sp. WP5 0.49 EX31_RS06470 2-hydroxyacid dehydrogenase 0.68 EX31_RS04095 peptide chain release factor 3 — —
Dickeya dadantii 3937 0.49 DDA3937_RS12295 2-hydroxyacid dehydrogenase 0.68 DDA3937_RS02445 peptide chain release factor 3 low > 74
Bacteroides stercoris CC31F 0.48 HMPREF1181_RS11170 2-hydroxyacid dehydrogenase 0.45 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Pectobacterium carotovorum WPP14 0.47 HER17_RS09630 2-hydroxyacid dehydrogenase 0.67 HER17_RS19065 peptide chain release factor 3 low > 75
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1575 putative dehydrogenase (NCBI ptt file) 0.45 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.46 BACOVA_04316 4-phosphoerythronate dehydrogenase 0.45 BACOVA_04458 peptide chain release factor 3 low > 94
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS12465 2-hydroxyacid dehydrogenase 0.46 ABI39_RS00385 peptide chain release factor 3 — —
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS16545 2-hydroxyacid dehydrogenase 0.46 HMPREF1058_RS07935 peptide chain release factor 3 — —
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS01675 2-hydroxyacid dehydrogenase 0.49 HMPREF1078_RS04145 peptide chain release factor 3 low > 61

Not shown: 4 genomes with orthologs for PP_1649 only; 35 genomes with orthologs for PP_0872 only