Conservation of cofitness between PP_3417 and PP_0363 in Pseudomonas putida KT2440

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3417 D-gluconate transporter 1.0 PP_0363 8-amino-7-oxononanoate synthase 0.53 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3338 gluconate permease GntT 0.84 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3338 gluconate permease GntT 0.84 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS23585 GntP family permease 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.41 15
Pseudomonas fluorescens SBW25 0.77 PFLU_RS23585 GntP family permease 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.73 4
Pseudomonas simiae WCS417 0.77 PS417_21980 permease DsdX 0.82 PS417_26000 8-amino-7-oxononanoate synthase 0.29 5
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2863 Gluconate permease 0.83 Pf6N2E2_4761 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.31 67
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03245 permease DsdX 0.83 AO353_07520 8-amino-7-oxononanoate synthase 0.38 29
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05055 permease DsdX 0.81 AO356_14140 8-amino-7-oxononanoate synthase low > 104
Pseudomonas sp. RS175 0.75 PFR28_00595 High-affinity gluconate transporter 0.84 PFR28_04102 8-amino-7-oxononanoate synthase 0.17 24
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1927 Gluconate permease 0.84 PfGW456L13_1148 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.37 44
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_556 Gluconate permease 0.83 Pf1N1B4_2488 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 87
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS05470 permease 0.40 HSERO_RS12245 8-amino-7-oxononanoate synthase low > 78
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.35 RR42_RS00930 8-amino-7-oxononanoate synthase low > 128
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS26910 GntP family permease 0.36 QEN71_RS01095 8-amino-7-oxononanoate synthase — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS13375 permease 0.36 BPHYT_RS02160 8-amino-7-oxononanoate synthase — —
Ralstonia solanacearum GMI1000 0.53 RS_RS22870 permease 0.35 RS_RS07435 8-amino-7-oxononanoate synthase low > 80
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_1667 gluconate permease GntT (TC 2.A.8.1.4) 0.27 Ga0059261_3508 7-keto-8-aminopelargonate synthetase and related enzymes — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS19095 gluconate:H+ symporter 0.35 ABZR87_RS12340 8-amino-7-oxononanoate synthase low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS05470 permease 0.35 RPSI07_RS16700 8-amino-7-oxononanoate synthase low > 81
Ralstonia solanacearum UW163 0.52 UW163_RS20965 permease 0.35 UW163_RS14155 8-amino-7-oxononanoate synthase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS18165 permease 0.35 RALBFv3_RS00820 8-amino-7-oxononanoate synthase low > 76
Paraburkholderia graminis OAS925 0.52 ABIE53_003515 GntP family gluconate:H+ symporter 0.37 ABIE53_000579 8-amino-7-oxononanoate synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04276 gluconate permease GntT 0.37 H281DRAFT_02095 8-amino-7-oxononanoate synthase low > 103
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS12640 gluconate:H+ symporter 0.46 ABZR86_RS15835 8-amino-7-oxononanoate synthase low > 74
Enterobacter sp. TBS_079 0.46 MPMX20_04302 High-affinity gluconate transporter 0.42 MPMX20_01404 8-amino-7-oxononanoate synthase low > 85
Pantoea sp. MT58 0.45 IAI47_14085 gluconate transporter 0.33 IAI47_13525 8-amino-7-oxononanoate synthase low > 76
Dickeya dianthicola ME23 0.45 DZA65_RS20960 gluconate transporter 0.40 DZA65_RS08970 8-amino-7-oxononanoate synthase low > 75
Dickeya dianthicola 67-19 0.45 HGI48_RS19890 gluconate transporter 0.40 HGI48_RS08680 8-amino-7-oxononanoate synthase low > 71
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4127 gluconate transporter 0.40 EX28DRAFT_2215 8-amino-7-oxononanoate synthase low > 76
Serratia liquefaciens MT49 0.44 IAI46_23960 gluconate transporter 0.36 IAI46_06530 8-amino-7-oxononanoate synthase low > 86
Dickeya dadantii 3937 0.44 DDA3937_RS19775 gluconate transporter 0.40 DDA3937_RS08515 8-amino-7-oxononanoate synthase low > 74
Escherichia coli BL21 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system 0.36 ECD_00743 8-amino-7-oxononanoate synthase low > 60
Escherichia coli ECRC99 0.44 KEDOAH_11155 gntT gluconate transporter 0.37 KEDOAH_21515 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC101 0.44 OKFHMN_16985 gntT gluconate transporter 0.37 OKFHMN_06395 bioF 8-amino-7-oxononanoate synthase — —
Escherichia fergusonii Becca 0.44 EFB2_00413 High-affinity gluconate transporter 0.37 EFB2_03329 8-amino-7-oxononanoate synthase low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19505 gluconate transporter 0.37 ECOLIN_RS04135 8-amino-7-oxononanoate synthase — —
Escherichia coli ECOR27 0.44 NOLOHH_08770 gntT gluconate transporter 0.36 NOLOHH_22765 bioF 8-amino-7-oxononanoate synthase low > 57
Escherichia coli ECRC102 0.44 NIAGMN_14755 gntT gluconate transporter 0.37 NIAGMN_04440 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC98 0.44 JDDGAC_20615 gntT gluconate transporter 0.37 JDDGAC_10030 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00288 High-affinity gluconate transporter 0.36 OHPLBJKB_02937 8-amino-7-oxononanoate synthase low > 73
Escherichia coli ECOR38 0.44 HEPCGN_15795 gntT gluconate transporter 0.36 HEPCGN_01645 bioF 8-amino-7-oxononanoate synthase low > 85
Escherichia coli ECRC62 0.44 BNILDI_02745 gntT gluconate transporter 0.37 BNILDI_21035 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC101 0.44 MCAODC_07515 gntT gluconate transporter 0.37 MCAODC_25610 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli BW25113 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.36 b0776 bioF 8-amino-7-oxononanoate synthase (NCBI) low > 76
Variovorax sp. SCN45 0.44 GFF1885 Gluconate transporter family protein 0.32 GFF144 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 127
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF602 High-affinity gluconate transporter GntT 0.38 GFF672 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) 0.35 BWI76_RS08765 8-amino-7-oxononanoate synthase low > 92
Rahnella sp. WP5 0.42 EX31_RS05050 gluconate transporter 0.37 EX31_RS23700 8-amino-7-oxononanoate synthase low > 89
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_2089 gluconate transporter 0.30 Echvi_0145 2-amino-3-ketobutyrate coenzyme A ligase low > 79
Rhodospirillum rubrum S1H 0.38 Rru_A3140 Gluconate transporter (NCBI) 0.26 Rru_A1146 5-aminolevulinic acid synthase (NCBI) low > 58
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS01125 gluconate permease 0.34 CA265_RS13580 8-amino-7-oxononanoate synthase low > 88
Alteromonas macleodii MIT1002 0.38 MIT1002_03473 5-keto-D-gluconate transporter 0.36 MIT1002_01380 8-amino-7-oxononanoate synthase low > 70
Erwinia tracheiphila SCR3 0.35 LU632_RS19170 gntU gluconate transporter 0.38 LU632_RS09135 bioF 8-amino-7-oxononanoate synthase — —
Pectobacterium carotovorum WPP14 0.28 HER17_RS00545 GntP family transporter 0.38 HER17_RS13455 8-amino-7-oxononanoate synthase low > 75
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3740 Gluconate permease 0.36 Ac3H11_3830 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 79
Fusobacterium nucleatum SB010 0.26 HUW76_01945 GntP family permease 0.23 HUW76_05725 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 35
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_01470 permease 0.38 CSW01_05650 8-amino-7-oxononanoate synthase low > 62
Shewanella loihica PV-4 0.23 Shew_2533 gluconate transporter (RefSeq) 0.35 Shew_1720 8-amino-7-oxononanoate synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.22 SO1771 permease, GntP family (NCBI ptt file) 0.35 SO2739 bioF 8-amino-7-oxononanoate synthase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.21 Shewana3_2684 gluconate transporter (RefSeq) 0.34 Shewana3_2518 aminotransferase, class I and II (RefSeq) — —

Not shown: 0 genomes with orthologs for PP_3417 only; 41 genomes with orthologs for PP_0363 only