Conservation of cofitness between PP_3118 and PP_0123 in Pseudomonas putida KT2440

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3118 DNA linked enzyme involved in DNA repair 1.0 PP_0123 DNA polymerase I, 5 0.18 17
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2086 DNA polymerase-like protein PA0670 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_22710 DNA repair nucleotidyltransferase 0.80 AO353_10930 DNA polymerase I 0.27 17
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21815 DNA repair nucleotidyltransferase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_5680 DNA polymerase-like protein PA0670 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_2821 DNA polymerase-like protein PA0670 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas sp. RS175 0.63 PFR28_01354 Protein ImuB 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas simiae WCS417 0.62 PS417_15585 DNA repair nucleotidyltransferase 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_2522 conserved hypothetical protein 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_2522 conserved hypothetical protein 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas stutzeri RCH2 0.61 Psest_1979 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.77 Psest_4219 DNA polymerase I low > 67
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas sp. S08-1 0.55 OH686_02405 DNA polymerase IV-like protein ImuB 0.77 OH686_12215 DNA polymerase I low > 80
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS18205 DNA polymerase Y family protein 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3896.1 hypothetical protein 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.43 ABIE51_RS11845 DNA polymerase Y family protein 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00240 DNA polymerase Y family protein 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS18140 DNA polymerase Y family protein 0.56 LRK55_RS06585 DNA polymerase I low > 63
Marinobacter adhaerens HP15 0.25 HP15_1334 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.56 HP15_293 DNA polymerase I low > 73
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS43590 DNA polymerase Y family protein 0.52 QEN71_RS17885 DNA polymerase I — —
Dechlorosoma suillum PS 0.17 Dsui_2266 nucleotidyltransferase/DNA polymerase involved in DNA repair 0.52 Dsui_0459 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.15 ABIE53_000205 protein ImuB 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_04986 protein ImuB 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS32800 nucleotidyltransferase 0.52 RR42_RS15050 DNA polymerase I 0.29 42
Ralstonia solanacearum GMI1000 0.14 RS_RS20935 DNA polymerase Y family protein 0.51 RS_RS11195 DNA polymerase I low > 80
Mucilaginibacter yixingensis YX-36 DSM 26809 0.13 ABZR88_RS12400 DNA polymerase Y family protein 0.37 ABZR88_RS20185 DNA polymerase I low > 71
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS11285 DNA polymerase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.13 GFF4008 DNA polymerase-like protein PA0670 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Dinoroseobacter shibae DFL-12 0.13 Dshi_3997 hypothetical protein (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Ralstonia solanacearum PSI07 0.13 RPSI07_RS03295 DNA polymerase Y family protein 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS20565 DNA polymerase Y family protein 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Alteromonas macleodii MIT1002 0.12 MIT1002_00041 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.62 MIT1002_00014 DNA polymerase I low > 70
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS20505 nucleotidyltransferase 0.36 CA265_RS19630 DNA polymerase I low > 88
Bosea sp. OAE506 0.11 ABIE41_RS17350 DNA polymerase Y family protein 0.31 ABIE41_RS03570 DNA polymerase I — —
Ralstonia solanacearum UW163 0.11 UW163_RS19255 DNA polymerase Y family protein 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS19920 DNA polymerase Y family protein 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_2477 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Variovorax sp. SCN45 0.11 GFF679 DNA polymerase-like protein PA0670 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.38 96
Phaeobacter inhibens DSM 17395 0.10 PGA1_c00330 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.39 PGA1_c31780 DNA polymerase I low > 62
Caulobacter crescentus NA1000 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.40 CCNA_03577 DNA polymerase I low > 66
Caulobacter crescentus NA1000 Δfur 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.40 CCNA_03577 DNA polymerase I 0.57 34
Variovorax sp. OAS795 0.10 ABID97_RS19220 DNA polymerase Y family protein 0.48 ABID97_RS09180 DNA polymerase I 0.34 13
Azospirillum sp. SherDot2 0.09 MPMX19_00258 Protein ImuB 0.38 MPMX19_04869 DNA polymerase I low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS05690 DNA polymerase Y family protein 0.39 A4249_RS13840 DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.08 AMB_RS15105 DNA polymerase Y family protein 0.39 AMB_RS21305 DNA polymerase I — —
Rhodopseudomonas palustris CGA009 0.07 TX73_009270 DNA polymerase Y family protein 0.36 TX73_024545 DNA polymerase I low > 86
Agrobacterium fabrum C58 0.07 Atu3229 hypothetical protein 0.41 Atu0110 DNA polymerase I — —
Acidovorax sp. GW101-3H11 0.07 Ac3H11_4194 DNA polymerase-like protein PA0670 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —

Not shown: 1 genomes with orthologs for PP_3118 only; 49 genomes with orthologs for PP_0123 only