Conservation of cofitness between IAI47_03725 and IAI47_03860 in Pantoea sp. MT58

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_03725 phosphoglycerate dehydrogenase 1.0 IAI47_03860 diaminopimelate decarboxylase 0.90 18
Klebsiella michiganensis M5al 0.89 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.72 BWI76_RS23360 diaminopimelate decarboxylase 0.85 3
Pectobacterium carotovorum WPP14 0.88 HER17_RS02725 phosphoglycerate dehydrogenase 0.74 HER17_RS03710 diaminopimelate decarboxylase 0.85 50
Erwinia tracheiphila SCR3 0.87 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.78 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Enterobacter sp. TBS_079 0.87 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.74 MPMX20_03705 Diaminopimelate decarboxylase 0.74 62
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.75 EX28DRAFT_2916 diaminopimelate decarboxylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.74 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Escherichia coli BL21 0.85 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.74 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.54 59
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.74 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli Nissle 1917 0.85 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.74 ECOLIN_RS15930 diaminopimelate decarboxylase low > 52
Serratia liquefaciens MT49 0.85 IAI46_20900 phosphoglycerate dehydrogenase 0.75 IAI46_20520 diaminopimelate decarboxylase 0.62 75
Escherichia coli BW25113 0.85 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.74 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.91 6
Escherichia coli ECRC102 0.85 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.74 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECOR27 0.85 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.74 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 57
Escherichia fergusonii Becca 0.85 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.74 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli ECRC99 0.85 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.74 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECOR38 0.85 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.74 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 85
Escherichia coli ECRC98 0.85 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.74 JDDGAC_23610 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.85 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.74 OKFHMN_19945 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC101 0.85 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.74 MCAODC_10470 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC62 0.85 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.74 BNILDI_10310 lysA diaminopimelate decarboxylase — —
Rahnella sp. WP5 0.84 EX31_RS21470 phosphoglycerate dehydrogenase 0.72 EX31_RS13275 diaminopimelate decarboxylase 0.79 50
Dickeya dadantii 3937 0.84 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.74 DDA3937_RS17425 diaminopimelate decarboxylase 0.88 7
Dickeya dianthicola 67-19 0.83 HGI48_RS18400 phosphoglycerate dehydrogenase 0.73 HGI48_RS17485 diaminopimelate decarboxylase low > 71
Dickeya dianthicola ME23 0.83 DZA65_RS19540 phosphoglycerate dehydrogenase 0.74 DZA65_RS18550 diaminopimelate decarboxylase 0.75 10
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_12555 phosphoglycerate dehydrogenase 0.17 CSW01_00635 diaminopimelate decarboxylase low > 62
Alteromonas macleodii MIT1002 0.70 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.13 MIT1002_00160 Diaminopimelate decarboxylase 0.93 9
Shewanella loihica PV-4 0.69 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.16 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.98 21
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.16 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.87 26
Shewanella sp. ANA-3 0.69 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.16 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.89 11
Shewanella oneidensis MR-1 0.69 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.16 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.90 6
Marinobacter adhaerens HP15 0.66 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.16 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.66 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.18 OH686_13800 diaminopimelate decarboxylase 0.57 69
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.19 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.19 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_08510 3-phosphoglycerate dehydrogenase 0.20 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.19 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.19 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.82 22
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_10300 3-phosphoglycerate dehydrogenase 0.19 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas putida KT2440 0.65 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.59 PP_2077 diaminopimelate decarboxylase low > 96
Pseudomonas stutzeri RCH2 0.65 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.19 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.19 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS28695 phosphoglycerate dehydrogenase 0.19 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.64 PS417_27040 3-phosphoglycerate dehydrogenase 0.19 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas sp. RS175 0.64 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.19 PFR28_04375 Diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Acinetobacter radioresistens SK82 0.63 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.16 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Variovorax sp. OAS795 0.63 ABID97_RS07235 phosphoglycerate dehydrogenase 0.17 ABID97_RS23305 diaminopimelate decarboxylase — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS02935 phosphoglycerate dehydrogenase 0.24 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS03185 phosphoglycerate dehydrogenase 0.24 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Dyella japonica UNC79MFTsu3.2 0.62 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.23 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Variovorax sp. SCN45 0.62 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.18 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Lysobacter sp. OAE881 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.24 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.20 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Rhizobium sp. OAE497 0.57 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.19 ABIE40_RS17530 diaminopimelate decarboxylase low > 107
Bosea sp. OAE506 0.56 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.21 ABIE41_RS08740 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.55 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.19 MPMX19_05819 Diaminopimelate decarboxylase — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.19 AZOBR_RS16945 diaminopimelate decarboxylase — —
Castellaniella sp019104865 MT123 0.52 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.17 ABCV34_RS12685 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.17 RR42_RS19050 diaminopimelate decarboxylase — —
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.12 BBR_RS19555 diaminopimelate decarboxylase 0.82 19

Not shown: 2 genomes with orthologs for IAI47_03725 only; 36 genomes with orthologs for IAI47_03860 only