| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS17670 | | LysR family transcriptional regulator | 1.0 | HSERO_RS16840 | | competence damage-inducible protein A | 0.36 | 1 |
| Paraburkholderia graminis OAS925 | 0.87 | ABIE53_005534 | | DNA-binding transcriptional LysR family regulator | 0.52 | ABIE53_003546 | | nicotinamide-nucleotide amidase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.85 | H281DRAFT_01284 | | transcriptional regulator, LysR family | 0.52 | H281DRAFT_06305 | | nicotinamide-nucleotide amidase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.85 | BPHYT_RS21645 | | LysR family transcriptional regulator | 0.53 | BPHYT_RS16895 | | competence damage-inducible protein A | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.75 | QEN71_RS23475 | | LysR family transcriptional regulator | 0.56 | QEN71_RS27055 | | CinA family protein | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS28515 | | LysR family transcriptional regulator | 0.56 | RR42_RS17625 | | damage-inducible protein CinA | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_2888 | | Transcriptional regulator, LysR family | 0.46 | Ac3H11_738 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5537 | | Transcriptional regulator, LysR family | 0.53 | GFF3091 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 90 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_18795 | | LysR family transcriptional regulator | 0.44 | PS417_05810 | | damage-inducible protein CinA | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.45 | PFLU_RS05880 | | CinA family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS20860 | | LysR family transcriptional regulator | 0.45 | PFLU_RS05880 | | CinA family protein | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS03085 | | LysR family transcriptional regulator | 0.54 | RS_RS13860 | | CinA family protein | — | — |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS00870 | | LysR family transcriptional regulator | 0.42 | AZOBR_RS14405 | | competence damage-inducible protein A | low | > 97 |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS18270 | | LysR family transcriptional regulator | 0.54 | UW163_RS07710 | | CinA family protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS16915 | | LysR family transcriptional regulator | 0.54 | RALBFv3_RS05915 | | CinA family protein | low | > 76 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_00088 | | HTH-type transcriptional regulator HdfR | 0.41 | MPMX19_01107 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 112 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS11195 | | LysR family transcriptional regulator | 0.37 | ABIE40_RS09070 | | CinA family protein | low | > 107 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_1630 | | Transcriptional regulator | 0.48 | Psest_2873 | | competence/damage-inducible protein CinA C-terminal domain | low | > 67 |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS23080 | | LysR substrate-binding domain-containing protein | 0.32 | ABIE41_RS16805 | | CinA family protein | low | > 77 |
| Pseudomonas putida KT2440 | 0.32 | PP_1863 | | Transcriptional regulator, LysR family | 0.51 | PP_1628 | | NMN amidohydrolase | low | > 96 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_2775 | | transcriptional regulator protein, LysR family | 0.37 | HP15_1046 | | competence damage-inducible protein A | low | > 73 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_22455 | | Transcriptional regulator, LysR family | 0.48 | OH686_18200 | | Nicotinamide-nucleotide amidase | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_2241 | | Transcriptional regulator, LysR family | 0.45 | PfGW456L13_4669 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 87 |
| Sinorhizobium meliloti 1021 | 0.31 | SMc04163 | | transcriptional regulator | 0.38 | SMc01039 | | hypothetical protein | low | > 103 |
| Agrobacterium fabrum C58 | 0.30 | Atu1765 | | transcriptional regulator, LysR family | 0.34 | Atu1442 | | competence/damage-inducible protein CinA | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_03135 | | LysR family transcriptional regulator | 0.46 | AO356_05675 | | damage-inducible protein CinA | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_2456 | | Transcriptional regulator, LysR family | 0.46 | Pf6N2E2_2994 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_272 | | Transcriptional regulator, LysR family | 0.46 | Pf1N1B4_3142 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 87 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_00975 | | HTH-type transcriptional regulator HdfR | 0.47 | PFR28_00471 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_19100 | | LysR family transcriptional regulator | 0.46 | AO353_16800 | | damage-inducible protein CinA | low | > 101 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS15435 | | LysR substrate-binding domain-containing protein | 0.41 | LRK54_RS14975 | | CinA family protein | low | > 59 |
| Variovorax sp. SCN45 | 0.27 | GFF5707 | | Transcriptional regulator, LysR family | 0.50 | GFF6273 | | Nicotinamide-nucleotide amidase (EC 3.5.1.42) | 0.61 | 2 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS15155 | | LysR substrate-binding domain-containing protein | 0.41 | LRK55_RS14690 | | CinA family protein | 0.57 | 15 |
| Pantoea sp. MT58 | 0.27 | IAI47_18925 | | LysR family transcriptional regulator | 0.40 | IAI47_04295 | | nicotinamide-nucleotide amidase | low | > 76 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c21890 | | transcriptional regulator, LysR family | 0.36 | PGA1_c14740 | | competence/damage-inducible protein CinA C-terminal domain | low | > 62 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_07280 | | LysR family transcriptional regulator | 0.43 | IAI46_03835 | | nicotinamide-nucleotide amidase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_2777 | | transcriptional regulator, LysR family (RefSeq) | 0.32 | Dshi_1579 | | CinA domain protein (RefSeq) | low | > 64 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS17245 | | LysR substrate-binding domain-containing protein | 0.55 | ABZR87_RS01580 | | CinA family protein | low | > 80 |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS14315 | | transcriptional regulator LrhA | 0.45 | HGI48_RS16360 | | nicotinamide-nucleotide amidase | low | > 71 |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS14990 | | transcriptional regulator LrhA | 0.45 | DZA65_RS17455 | | nicotinamide-nucleotide amidase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.25 | LU632_RS07960 | lrhA | transcriptional regulator LrhA | 0.40 | LU632_RS15740 | pncC | nicotinamide-nucleotide amidase | — | — |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_02974 | | HTH-type transcriptional regulator GltC | 0.42 | MIT1002_00954 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 70 |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS14340 | | transcriptional regulator LrhA | 0.45 | DDA3937_RS16250 | | nicotinamide-nucleotide amidase | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS17870 | | LysR family transcriptional regulator | 0.42 | ABZR86_RS00655 | | CinA family protein | low | > 74 |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_03219 | | HTH-type transcriptional regulator HdfR | 0.43 | MPMX20_03581 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF1893 | | LysR family transcriptional regulator lrhA | 0.43 | GFF4694 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 78 |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_0320 | | Transcriptional regulator | 0.43 | EX28DRAFT_2786 | | amidohydrolase, PncC family | low | > 76 |
| Klebsiella michiganensis M5al | 0.23 | BWI76_RS20200 | | transcriptional regulator LrhA | 0.43 | BWI76_RS22185 | | hypothetical protein | low | > 92 |
| Escherichia fergusonii Becca | 0.22 | EFB2_01569 | | HTH-type transcriptional regulator HdfR | 0.43 | EFB2_01224 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.22 | OHPLBJKB_01416 | | HTH-type transcriptional regulator HdfR | 0.44 | OHPLBJKB_01034 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 73 |
| Escherichia coli ECRC100 | 0.22 | OKFHMN_22830 | lrhA | transcriptional regulator LrhA | 0.43 | OKFHMN_20700 | pncC | nicotinamide-nucleotide amidase | low | > 80 |
| Escherichia coli ECRC99 | 0.22 | KEDOAH_05365 | lrhA | transcriptional regulator LrhA | 0.43 | KEDOAH_07435 | pncC | nicotinamide-nucleotide amidase | — | — |
| Escherichia coli ECRC62 | 0.22 | BNILDI_13370 | lrhA | transcriptional regulator LrhA | 0.44 | BNILDI_11100 | pncC | nicotinamide-nucleotide amidase | low | > 75 |
| Escherichia coli ECRC98 | 0.22 | JDDGAC_26795 | lrhA | transcriptional regulator LrhA | 0.43 | JDDGAC_24365 | pncC | nicotinamide-nucleotide amidase | low | > 86 |
| Escherichia coli ECOR27 | 0.22 | NOLOHH_14450 | lrhA | transcriptional regulator LrhA | 0.43 | NOLOHH_12540 | pncC | nicotinamide-nucleotide amidase | low | > 75 |
| Escherichia coli ECRC102 | 0.22 | NIAGMN_20600 | lrhA | transcriptional regulator LrhA | 0.43 | NIAGMN_18470 | pncC | nicotinamide-nucleotide amidase | — | — |
| Escherichia coli BW25113 | 0.22 | b2289 | lrhA | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | 0.44 | b2700 | ygaD | competence damage-inducible protein A (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.22 | HEPCGN_22035 | lrhA | transcriptional regulator LrhA | 0.43 | HEPCGN_19895 | pncC | nicotinamide-nucleotide amidase | low | > 87 |
| Escherichia coli BL21 | 0.22 | ECD_02214 | | transcriptional repressor of flagellar, motility and chemotaxis genes | 0.44 | ECD_02550 | | nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase | low | > 61 |
| Escherichia coli ECRC101 | 0.22 | MCAODC_13870 | lrhA | transcriptional regulator LrhA | 0.43 | MCAODC_11225 | pncC | nicotinamide-nucleotide amidase | low | > 87 |
| Rahnella sp. WP5 | 0.22 | EX31_RS19440 | | transcriptional regulator LrhA | 0.46 | EX31_RS07805 | | nicotinamide-nucleotide amidase | low | > 89 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS22410 | | LysR substrate-binding domain-containing protein | 0.46 | ABID97_RS04855 | | CinA family protein | low | > 91 |
| Escherichia coli Nissle 1917 | 0.21 | ECOLIN_RS13290 | | transcriptional regulator LrhA | 0.44 | ECOLIN_RS15065 | | nicotinamide-nucleotide amidase | low | > 55 |
Not shown: 7 genomes with orthologs for HSERO_RS17670 only; 18 genomes with orthologs for HSERO_RS16840 only