| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS01565 | | hemolysin secretion protein D | 1.0 | HSERO_RS16840 | | competence damage-inducible protein A | 0.30 | 7 |
| Dechlorosoma suillum PS | 0.59 | Dsui_2025 | | RND family efflux transporter, MFP subunit | 0.46 | Dsui_0710 | | competence/damage-inducible protein CinA-like protein | low | > 51 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_004107 | | multidrug efflux system membrane fusion protein | 0.52 | ABIE53_003546 | | nicotinamide-nucleotide amidase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS22510 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.53 | BPHYT_RS16895 | | competence damage-inducible protein A | 0.28 | 3 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_03189 | | membrane fusion protein, multidrug efflux system | 0.52 | H281DRAFT_06305 | | nicotinamide-nucleotide amidase | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS19405 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | ABZR87_RS01580 | | CinA family protein | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS20100 | | efflux RND transporter periplasmic adaptor subunit | 0.56 | QEN71_RS27055 | | CinA family protein | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS05170 | | efflux RND transporter periplasmic adaptor subunit | 0.54 | RPSI07_RS11330 | | CinA family protein | — | — |
| Azospirillum sp. SherDot2 | 0.52 | MPMX19_02967 | | Efflux pump periplasmic linker BepF | 0.41 | MPMX19_01107 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS27680 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.56 | RR42_RS17625 | | damage-inducible protein CinA | low | > 128 |
| Variovorax sp. SCN45 | 0.46 | GFF430 | | RND efflux system, membrane fusion protein | 0.50 | GFF6273 | | Nicotinamide-nucleotide amidase (EC 3.5.1.42) | low | > 127 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS17355 | | efflux RND transporter periplasmic adaptor subunit | 0.46 | ABID97_RS04855 | | CinA family protein | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_259 | | Probable Co/Zn/Cd efflux system membrane fusion protein | 0.46 | Ac3H11_738 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 79 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_947 | | Multidrug efflux membrane fusion protein MexE | 0.46 | Pf6N2E2_2994 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 103 |
| Pseudomonas sp. RS175 | 0.43 | PFR28_02012 | | Multidrug resistance protein MdtA | 0.47 | PFR28_00471 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_3061 | | Multidrug efflux membrane fusion protein MexE | 0.45 | PfGW456L13_4669 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_4865 | | Multidrug efflux membrane fusion protein MexE | 0.46 | Pf1N1B4_3142 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_23965 | | RND transporter MFP subunit | 0.46 | AO353_16800 | | damage-inducible protein CinA | low | > 101 |
| Pseudomonas putida KT2440 | 0.41 | PP_3425 | | Efflux transporter RND family, MFP subunit | 0.51 | PP_1628 | | NMN amidohydrolase | low | > 96 |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS14880 | | efflux RND transporter periplasmic adaptor subunit | 0.37 | ABIE40_RS09070 | | CinA family protein | low | > 107 |
| Agrobacterium fabrum C58 | 0.40 | Atu2482 | | HlyD family secretion protein | 0.34 | Atu1442 | | competence/damage-inducible protein CinA | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_2145 | | RND family efflux transporter, MFP subunit | 0.48 | Psest_2873 | | competence/damage-inducible protein CinA C-terminal domain | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS14265 | | efflux RND transporter periplasmic adaptor subunit | 0.45 | PFLU_RS05880 | | CinA family protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS14265 | | efflux RND transporter periplasmic adaptor subunit | 0.45 | PFLU_RS05880 | | CinA family protein | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_27600 | | RND transporter MFP subunit | 0.46 | AO356_05675 | | damage-inducible protein CinA | low | > 104 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_13195 | | RND transporter MFP subunit | 0.44 | PS417_05810 | | damage-inducible protein CinA | low | > 88 |
| Pseudomonas sp. S08-1 | 0.38 | OH686_01010 | | Multidrug efflux system, membrane fusion component | 0.48 | OH686_18200 | | Nicotinamide-nucleotide amidase | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.37 | ABZR86_RS15405 | | efflux RND transporter periplasmic adaptor subunit | 0.42 | ABZR86_RS00655 | | CinA family protein | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.37 | SMc01094 | | multidrug efflux system transmembrane protein | 0.38 | SMc01039 | | hypothetical protein | low | > 103 |
| Pantoea sp. MT58 | 0.37 | IAI47_10305 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | IAI47_04295 | | nicotinamide-nucleotide amidase | low | > 76 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_1473 | | RND family efflux transporter, MFP subunit | 0.43 | EX28DRAFT_2786 | | amidohydrolase, PncC family | low | > 76 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_09930 | | efflux RND transporter periplasmic adaptor subunit | 0.43 | IAI46_03835 | | nicotinamide-nucleotide amidase | low | > 86 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS08135 | | efflux RND transporter periplasmic adaptor subunit | 0.41 | LRK54_RS14975 | | CinA family protein | low | > 59 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_01154 | | Multidrug resistance protein MdtE | 0.43 | MPMX20_03581 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 85 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS12950 | | acriflavin resistance protein AcrA | 0.43 | BWI76_RS22185 | | hypothetical protein | low | > 92 |
| Rahnella sp. WP5 | 0.36 | EX31_RS01490 | | efflux RND transporter periplasmic adaptor subunit | 0.46 | EX31_RS07805 | | nicotinamide-nucleotide amidase | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.3478.1 | | RND efflux system, membrane fusion protein CmeA | 0.42 | Xcc-8004.3118.1 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 74 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS09485 | | efflux RND transporter periplasmic adaptor subunit | 0.43 | AMB_RS12830 | | CinA family protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS07885 | | efflux RND transporter periplasmic adaptor subunit | 0.41 | LRK55_RS14690 | | CinA family protein | low | > 63 |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_02999 | | Efflux pump periplasmic linker BepF | 0.42 | MIT1002_00954 | | Nicotinamide-nucleotide amidohydrolase PncC | low | > 70 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_14950 | | Efflux RND transporter periplasmic adaptor subunit | 0.41 | OKGIIK_03735 | pncC | damage-inducible protein CinA | low | > 52 |
| Lysobacter sp. OAE881 | 0.34 | ABIE51_RS01055 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | ABIE51_RS07790 | | CinA family protein | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU3247 | | efflux transporter, RND family, MFP subunit (TIGR) | 0.36 | DVU1033 | cinA | competence/damage-inducible protein CinA protein, truncation (TIGR) | low | > 55 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS16480 | | hemolysin secretion protein D | 0.42 | AZOBR_RS14405 | | competence damage-inducible protein A | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.31 | A4249_RS09930 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | A4249_RS04795 | | CinA family protein | low | > 48 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF4247 | | RND efflux system, membrane fusion protein CmeA | 0.43 | GFF4694 | | C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS | low | > 78 |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS17115 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | ABIE41_RS16805 | | CinA family protein | low | > 77 |
| Phocaeicola vulgatus CL09T03C04 | 0.23 | HMPREF1058_RS02445 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | HMPREF1058_RS04115 | | CinA family protein | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS01695 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | ABI39_RS17105 | | CinA family protein | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.21 | HMPREF1078_RS07685 | | efflux RND transporter periplasmic adaptor subunit | 0.37 | HMPREF1078_RS09765 | | CinA family protein | low | > 61 |
Not shown: 8 genomes with orthologs for HSERO_RS01565 only; 31 genomes with orthologs for HSERO_RS16840 only