Conservation of cofitness between HSERO_RS03475 and HSERO_RS15005 in Herbaspirillum seropedicae SmR1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03475 NUDIX hydrolase 1.0 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.35 11
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.70 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.72 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 90
Ralstonia solanacearum UW163 0.59 UW163_RS07885 NUDIX hydrolase 0.80 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05740 NUDIX hydrolase 0.80 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO low > 76
Ralstonia solanacearum PSI07 0.59 RPSI07_RS11560 NUDIX hydrolase 0.80 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO low > 81
Ralstonia solanacearum GMI1000 0.59 RS_RS13630 NUDIX hydrolase 0.80 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Paraburkholderia graminis OAS925 0.59 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) 0.79 ABIE53_002068 ribosomal protein S12 methylthiotransferase low > 113
Variovorax sp. SCN45 0.58 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.71 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.79 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase low > 103
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01335 NUDIX hydrolase 0.80 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS17470 NUDIX hydrolase 0.79 RR42_RS07640 ribosomal protein S12 methylthiotransferase low > 128
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26735 NUDIX hydrolase 0.80 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO low > 153
Variovorax sp. OAS795 0.55 ABID97_RS04420 NUDIX hydrolase 0.71 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO low > 91
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS03365 NUDIX hydrolase 0.79 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO — —
Dechlorosoma suillum PS 0.52 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase 0.67 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO low > 51
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS18575 NUDIX hydrolase 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS18575 NUDIX hydrolase 0.61 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas simiae WCS417 0.41 PS417_16535 NUDIX hydrolase 0.61 PS417_05880 ribosomal protein S12 methylthiotransferase low > 88
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS02190 NUDIX hydrolase 0.61 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.62 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 87
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_22115 NUDIX hydrolase 0.61 AO356_05600 ribosomal protein S12 methylthiotransferase RimO low > 104
Pseudomonas sp. RS175 0.40 PFR28_02618 Phosphatase NudJ 0.62 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO low > 88
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27700 NUDIX hydrolase 0.62 AO353_16875 ribosomal protein S12 methylthiotransferase RimO low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.61 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 103
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.62 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 87
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3189 NUDIX hydrolase 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase low > 86
Lysobacter sp. OAE881 0.39 ABIE51_RS11505 NUDIX hydrolase 0.61 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3189 NUDIX hydrolase 0.62 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase low > 86
Pseudomonas stutzeri RCH2 0.38 Psest_2022 ADP-ribose pyrophosphatase 0.61 Psest_2632 ribosomal protein S12 methylthiotransferase RimO low > 67
Pseudomonas sp. S08-1 0.38 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.61 OH686_18875 ribosomal protein S12 methylthiotransferase RimO low > 80
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.64 B158DRAFT_2522 SSU ribosomal protein S12P methylthiotransferase (EC 2.-.-.-) low > 40
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_06880 Phosphatase NudJ 0.60 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 52
Rhodanobacter denitrificans MT42 0.38 LRK55_RS00170 NUDIX hydrolase 0.61 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO low > 63
Pseudomonas putida KT2440 0.37 PP_4013 MutT/nudix family protein 0.61 PP_1197 ribosomal protein S12 methylthiotransferase low > 96
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS00430 NUDIX hydrolase 0.61 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO low > 59
Marinobacter adhaerens HP15 0.34 HP15_2085 MutT/nudix family protein 0.66 HP15_2459 MiaB-like tRNA modifying enzyme YliG low > 73
Acinetobacter radioresistens SK82 0.34 MPMX26_01049 Phosphatase NudJ 0.62 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.70 32
Shewanella amazonensis SB2B 0.33 Sama_2061 MutT/nudix family protein (RefSeq) 0.60 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) low > 62
Shewanella sp. ANA-3 0.29 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.60 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO2631 MutT/nudix family protein (NCBI ptt file) 0.60 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.24 MCAODC_22335 nudJ phosphatase NudJ 0.65 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 87
Escherichia coli Nissle 1917 0.24 ECOLIN_RS06630 phosphatase NudJ 0.65 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECOR27 0.24 NOLOHH_20895 nudJ phosphatase NudJ 0.65 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.57 58
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02534 Phosphatase NudJ 0.65 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO low > 73
Escherichia coli ECRC98 0.24 JDDGAC_06615 nudJ phosphatase NudJ 0.65 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli ECRC62 0.24 BNILDI_19060 nudJ phosphatase NudJ 0.65 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Escherichia fergusonii Becca 0.24 EFB2_02841 Phosphatase NudJ 0.65 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli BW25113 0.24 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.65 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.24 HEPCGN_24225 nudJ phosphatase NudJ 0.65 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 87
Escherichia coli BL21 0.24 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.65 ECD_00802 ribosomal protein S12 methylthiotransferase — —
Escherichia coli ECRC99 0.24 KEDOAH_24835 nudJ phosphatase NudJ 0.65 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC100 0.24 OKFHMN_00750 nudJ phosphatase NudJ 0.65 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 80
Escherichia coli ECRC102 0.24 NIAGMN_24895 nudJ phosphatase NudJ 0.65 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Enterobacter sp. TBS_079 0.24 MPMX20_01818 Phosphatase NudJ 0.66 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO low > 85
Klebsiella michiganensis M5al 0.23 BWI76_RS11320 NUDIX hydrolase 0.66 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.66 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO low > 76
Erwinia tracheiphila SCR3 0.23 LU632_RS14570 NUDIX hydrolase 0.65 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.65 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 78
Pectobacterium carotovorum WPP14 0.22 HER17_RS11620 NUDIX hydrolase 0.65 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS11480 NUDIX hydrolase 0.64 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Dickeya dianthicola 67-19 0.22 HGI48_RS11525 NUDIX hydrolase 0.64 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS11860 NUDIX hydrolase 0.64 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO low > 75

Not shown: 5 genomes with orthologs for HSERO_RS03475 only; 25 genomes with orthologs for HSERO_RS15005 only