Conservation of cofitness between HSERO_RS19630 and HSERO_RS09415 in Herbaspirillum seropedicae SmR1

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS19630 AMP nucleosidase 1.0 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.43 5
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS17860 AMP nucleosidase 0.59 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS33635 AMP nucleosidase 0.59 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_06027 AMP nucleosidase 0.60 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Paraburkholderia graminis OAS925 0.68 ABIE53_004847 AMP nucleosidase 0.60 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Azospirillum brasilense Sp245 0.66 AZOBR_RS14175 AMP nucleosidase 0.21 AZOBR_RS06905 pseudouridine synthase low > 97
Azospirillum sp. SherDot2 0.65 MPMX19_00597 AMP nucleosidase 0.21 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Acidovorax sp. GW101-3H11 0.61 Ac3H11_4669 AMP nucleosidase (EC 3.2.2.4) 0.49 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Variovorax sp. SCN45 0.59 GFF3583 AMP nucleosidase (EC 3.2.2.4) 0.49 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Variovorax sp. OAS795 0.59 ABID97_RS00880 AMP nucleosidase 0.47 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF370 AMP nucleosidase (EC 3.2.2.4) 0.47 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Castellaniella sp019104865 MT123 0.58 ABCV34_RS12200 AMP nucleosidase 0.47 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Agrobacterium fabrum C58 0.57 Atu1006 AMP nucleosidase 0.22 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Rhizobium sp. OAE497 0.56 ABIE40_RS05905 AMP nucleosidase 0.23 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Sinorhizobium meliloti 1021 0.56 SMc02386 AMP nucleosidase 0.22 SMc01275 ribosomal large subunit pseudouridine synthase C protein — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_3289 AMP nucleosidase (RefSeq) 0.18 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.53 PGA1_c34250 AMP nucleosidase Amn 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Ralstonia solanacearum UW163 0.52 UW163_RS23015 AMP nucleosidase 0.59 UW163_RS11840 RluA family pseudouridine synthase — —
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS21185 AMP nucleosidase 0.58 RR42_RS14155 pseudouridine synthase low > 128
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS22470 AMP nucleosidase 0.59 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum PSI07 0.52 RPSI07_RS00695 AMP nucleosidase 0.59 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.52 RS_RS18175 AMP nucleosidase 0.59 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS17145 AMP nucleosidase 0.60 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF3974 AMP nucleosidase (EC 3.2.2.4) 0.42 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Enterobacter sp. TBS_079 0.41 MPMX20_02987 AMP nucleosidase 0.42 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_00265 AMP nucleosidase 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C — —
Caulobacter crescentus NA1000 0.41 CCNA_00265 AMP nucleosidase 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14550 AMP nucleosidase 0.18 A4249_RS07865 RluA family pseudouridine synthase low > 48
Pseudomonas stutzeri RCH2 0.41 Psest_0542 AMP nucleosidase 0.41 Psest_1680 pseudouridine synthase, RluA family — —
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0555 AMP nucleosidase 0.42 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Klebsiella michiganensis M5al 0.41 BWI76_RS18545 AMP nucleosidase 0.43 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Pseudomonas simiae WCS417 0.41 PS417_24585 AMP nucleosidase 0.42 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_4012 AMP nucleosidase 0.18 Ga0059261_1033 pseudouridine synthase, RluA family — —
Erwinia tracheiphila SCR3 0.41 LU632_RS14885 AMP nucleosidase 0.43 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pseudomonas fluorescens SBW25 0.41 PFLU_RS26515 AMP nucleosidase 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS26515 AMP nucleosidase 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Escherichia coli ECRC101 0.41 MCAODC_20210 amn AMP nucleosidase 0.42 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC102 0.41 NIAGMN_22685 amn AMP nucleosidase 0.42 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli Nissle 1917 0.41 ECOLIN_RS11455 AMP nucleosidase 0.42 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli BL21 0.41 ECD_01894 AMP nucleosidase 0.42 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli ECRC98 0.41 JDDGAC_29310 amn AMP nucleosidase 0.42 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.58 44
Escherichia fergusonii Becca 0.41 EFB2_01930 AMP nucleosidase 0.42 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECOR27 0.41 NOLOHH_16125 amn AMP nucleosidase 0.42 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC100 0.41 OKFHMN_25180 amn AMP nucleosidase 0.42 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECOR38 0.41 HEPCGN_03515 amn AMP nucleosidase 0.42 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC62 0.41 BNILDI_14920 amn AMP nucleosidase 0.42 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli BW25113 0.41 b1982 amn AMP nucleosidase (NCBI) 0.42 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli ECRC99 0.41 KEDOAH_02930 amn AMP nucleosidase 0.42 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01726 AMP nucleosidase 0.42 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4337 AMP nucleosidase 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4337 AMP nucleosidase 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_06335 AMP nucleosidase 0.42 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2721 AMP nucleosidase (EC 3.2.2.4) 0.41 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas sp. RS175 0.40 PFR28_03840 AMP nucleosidase 0.42 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_15450 AMP nucleosidase 0.42 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Dickeya dadantii 3937 0.40 DDA3937_RS06940 AMP nucleosidase 0.41 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5027 AMP nucleosidase (EC 3.2.2.4) 0.42 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1388 AMP nucleosidase (EC 3.2.2.4) 0.41 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas putida KT2440 0.40 PP_4779 AMP nucleosidase 0.40 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pantoea sp. MT58 0.40 IAI47_07865 AMP nucleosidase 0.41 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Serratia liquefaciens MT49 0.40 IAI46_16720 AMP nucleosidase 0.42 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Dickeya dianthicola ME23 0.39 DZA65_RS07265 AMP nucleosidase 0.41 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola 67-19 0.39 HGI48_RS06920 AMP nucleosidase 0.41 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Pectobacterium carotovorum WPP14 0.39 HER17_RS14005 AMP nucleosidase 0.42 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Rahnella sp. WP5 0.39 EX31_RS17755 AMP nucleosidase 0.44 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Pseudomonas sp. S08-1 0.39 OH686_08855 AMP nucleosidase 0.41 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80

Not shown: 1 genomes with orthologs for HSERO_RS19630 only; 16 genomes with orthologs for HSERO_RS09415 only