Conservation of cofitness between HSERO_RS15005 and HSERO_RS08405 in Herbaspirillum seropedicae SmR1

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 1.0 HSERO_RS08405 membrane protein 0.43 2
Ralstonia solanacearum GMI1000 0.80 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.41 RS_RS11430 HlyC/CorC family transporter low > 80
Ralstonia solanacearum IBSBF1503 0.80 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.40 RALBFv3_RS03950 HlyC/CorC family transporter low > 76
Ralstonia solanacearum UW163 0.80 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.40 UW163_RS09720 HlyC/CorC family transporter — —
Ralstonia sp. UNC404CL21Col 0.80 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.42 ABZR87_RS15885 hemolysin family protein low > 80
Ralstonia solanacearum PSI07 0.80 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.41 RPSI07_RS13270 HlyC/CorC family transporter low > 81
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.42 RR42_RS04375 magnesium transporter low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.72 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.25 GFF4625 Magnesium and cobalt efflux protein CorC low > 90
Variovorax sp. SCN45 0.71 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.47 GFF2520 UPF0053 inner membrane protein YtfL low > 127
Variovorax sp. OAS795 0.71 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.49 ABID97_RS07170 hemolysin family protein low > 91
Acidovorax sp. GW101-3H11 0.70 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.47 Ac3H11_4775 Putative membrane protein low > 79
Dechlorosoma suillum PS 0.67 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.28 Dsui_3105 CBS domain-containing protein low > 51
Klebsiella michiganensis M5al 0.66 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.52 BWI76_RS02765 membrane protein low > 92
Enterobacter sp. TBS_079 0.66 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.53 MPMX20_00495 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.52 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.52 GFF871 Putative membrane protein low > 78
Escherichia coli BW25113 0.65 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.53 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECOR38 0.65 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 HEPCGN_10215 paeA Polyamine export protein low > 87
Escherichia coli BL21 0.65 ECD_00802 ribosomal protein S12 methylthiotransferase 0.53 ECD_04089 UPF0053 family inner membrane protein low > 61
Escherichia coli ECRC101 0.65 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 MCAODC_02530 paeA Polyamine export protein low > 87
Escherichia coli ECRC99 0.65 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC98 0.65 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 JDDGAC_15655 paeA Polyamine export protein low > 86
Escherichia fergusonii Becca 0.65 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.53 EFB2_04311 hypothetical protein low > 86
Escherichia coli ECOR27 0.65 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 NOLOHH_04280 paeA Polyamine export protein low > 75
Escherichia coli ECRC102 0.65 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 NIAGMN_09865 paeA Polyamine export protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.53 OHPLBJKB_03816 hypothetical protein low > 73
Escherichia coli ECRC62 0.65 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 BNILDI_07240 tlyC Polyamine export protein low > 75
Escherichia coli Nissle 1917 0.65 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.53 ECOLIN_RS24495 hemolysin family protein — —
Erwinia tracheiphila SCR3 0.65 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.51 LU632_RS02100 hemolysin family protein low > 74
Escherichia coli ECRC100 0.65 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 OKFHMN_12015 paeA Polyamine export protein low > 80
Pectobacterium carotovorum WPP14 0.65 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.51 HER17_RS03970 hemolysin family protein low > 75
Dickeya dadantii 3937 0.64 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.52 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.52 DZA65_RS18310 HlyC/CorC family transporter low > 75
Dickeya dianthicola 67-19 0.64 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.52 HGI48_RS17225 HlyC/CorC family transporter low > 71
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.51 CSW01_18340 HlyC/CorC family transporter low > 62
Acinetobacter radioresistens SK82 0.62 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.51 MPMX26_02321 hypothetical protein low > 36
Azospirillum sp. SherDot2 0.62 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.26 MPMX19_04101 hypothetical protein low > 112
Lysobacter sp. OAE881 0.61 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO 0.20 ABIE51_RS06575 hemolysin family protein low > 62
Azospirillum brasilense Sp245 0.61 AZOBR_RS14980 ribosomal protein S12 methylthiotransferase 0.27 AZOBR_RS16970 hypothetical protein low > 97
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.23 ABZR86_RS19900 hemolysin family protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.21 LRK54_RS12975 hemolysin family protein low > 59
Rhodanobacter denitrificans MT42 0.61 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.21 LRK55_RS12675 hemolysin family protein low > 63
Shewanella sp. ANA-3 0.60 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.54 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.60 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.51 Sama_3284 hemolysin, putative (RefSeq) low > 62
Shewanella oneidensis MR-1 0.60 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.53 SO4351 CBS domain protein (NCBI ptt file) 0.36 20
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.22 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Magnetospirillum magneticum AMB-1 0.58 AMB_RS15345 30S ribosomal protein S12 methylthiotransferase RimO 0.23 AMB_RS10875 HlyC/CorC family transporter low > 64
Rhodopseudomonas palustris CGA009 0.58 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO 0.23 TX73_014560 hemolysin family protein low > 86
Rhodospirillum rubrum S1H 0.58 Rru_A2811 hypothetical protein (NCBI) 0.24 Rru_A0756 hypothetical protein (NCBI) low > 58
Bosea sp. OAE506 0.57 ABIE41_RS15895 30S ribosomal protein S12 methylthiotransferase RimO 0.21 ABIE41_RS13905 hemolysin family protein low > 77
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.23 Ga0059261_1443 Hemolysins and related proteins containing CBS domains low > 68
Dinoroseobacter shibae DFL-12 0.54 Dshi_2618 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.20 Dshi_3672 protein of unknown function DUF21 (RefSeq) low > 64
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS04095 30S ribosomal protein S12 methylthiotransferase RimO 0.21 HMPREF1058_RS12080 HlyC/CorC family transporter low > 67
Bacteroides thetaiotaomicron VPI-5482 0.28 BT0913 putative Fe-S oxidoreductase (NCBI ptt file) 0.20 BT0148 putative hemolysin (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS17125 30S ribosomal protein S12 methylthiotransferase RimO 0.21 ABI39_RS04720 HlyC/CorC family transporter low > 72
Bacteroides ovatus ATCC 8483 0.27 BACOVA_00737 ribosomal protein S12 methylthiotransferase RimO 0.20 BACOVA_01289 hypothetical protein low > 94
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS16335 30S ribosomal protein S12 methylthiotransferase RimO 0.19 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS01815 30S ribosomal protein S12 methylthiotransferase RimO 0.23 HMPREF1078_RS00430 hemolysin family protein low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU3151 MiaB-like tRNA modifying enzyme YliG, TIGR01125 (TIGR) 0.24 DVU2148 CBS/transporter associated domain protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_1701 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.24 DvMF_0831 protein of unknown function DUF21 (RefSeq) low > 51

Not shown: 28 genomes with orthologs for HSERO_RS15005 only; 11 genomes with orthologs for HSERO_RS08405 only