Conservation of cofitness between HSERO_RS00910 and HSERO_RS02620 in Herbaspirillum seropedicae SmR1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS00910 peptidase 1.0 HSERO_RS02620 cobalt transporter 0.42 16
Cupriavidus basilensis FW507-4G11 0.83 RR42_RS01060 peptidase 0.63 RR42_RS30535 cobalt transporter low > 128
Variovorax sp. SCN45 0.81 GFF4484 ATP-dependent protease subunit HslV (EC 3.4.25.2) 0.16 GFF2069 Cobalt-zinc-cadmium resistance protein low > 127
Dechlorosoma suillum PS 0.80 Dsui_0581 ATP-dependent protease HslVU, peptidase subunit 0.16 Dsui_0813 cation diffusion facilitator family transporter low > 51
Variovorax sp. OAS795 0.79 ABID97_RS06180 ATP-dependent protease subunit HslV 0.13 ABID97_RS24945 cation diffusion facilitator family transporter low > 91
Castellaniella sp019104865 MT123 0.79 ABCV34_RS13415 ATP-dependent protease subunit HslV 0.55 ABCV34_RS08935 cation diffusion facilitator family transporter low > 48
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2004 ATP-dependent protease HslV (EC 3.4.25.-) 0.16 Ac3H11_4676 Cobalt-zinc-cadmium resistance protein low > 79
Shewanella amazonensis SB2B 0.70 Sama_0441 ATP-dependent protease peptidase subunit (RefSeq) 0.17 Sama_3430 cation efflux family protein (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF552 ATP-dependent protease HslV (EC 3.4.25.-) 0.15 GFF1671 Cobalt-zinc-cadmium resistance protein low > 90
Dickeya dadantii 3937 0.69 DDA3937_RS00920 ATP-dependent protease subunit HslV 0.19 DDA3937_RS00840 CDF family cation-efflux transporter FieF low > 74
Shewanella loihica PV-4 0.69 Shew_0375 ATP-dependent protease peptidase subunit (RefSeq) 0.17 Shew_3568 cation diffusion facilitator family transporter (RefSeq)
Dickeya dianthicola ME23 0.69 DZA65_RS21500 ATP-dependent protease subunit HslV 0.18 DZA65_RS21580 CDF family cation-efflux transporter FieF low > 75
Dickeya dianthicola 67-19 0.69 HGI48_RS20455 ATP-dependent protease subunit HslV 0.18 HGI48_RS20535 CDF family cation-efflux transporter FieF low > 71
Serratia liquefaciens MT49 0.69 IAI46_24570 ATP-dependent protease subunit HslV 0.19 IAI46_24650 CDF family cation-efflux transporter FieF low > 86
Pectobacterium carotovorum WPP14 0.68 HER17_RS00855 ATP-dependent protease subunit HslV 0.19 HER17_RS00720 CDF family cation-efflux transporter FieF low > 75
Rahnella sp. WP5 0.67 EX31_RS14240 ATP-dependent protease subunit HslV 0.20 EX31_RS10790 cation diffusion facilitator family transporter low > 89
Erwinia tracheiphila SCR3 0.67 LU632_RS19670 hslV ATP-dependent protease subunit HslV 0.16 LU632_RS21845 fieF CDF family cation-efflux transporter FieF low > 74
Escherichia coli ECRC99 0.66 KEDOAH_14425 hslV ATP-dependent protease subunit HslV 0.17 KEDOAH_14320 fieF CDF family cation-efflux transporter FieF
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_04119 ATP-dependent protease subunit HslV 0.17 OHPLBJKB_04136 Ferrous-iron efflux pump FieF low > 73
Escherichia coli ECRC98 0.66 JDDGAC_17360 hslV ATP-dependent protease subunit HslV 0.17 JDDGAC_17460 fieF CDF family cation-efflux transporter FieF low > 86
Escherichia fergusonii Becca 0.66 EFB2_04686 ATP-dependent protease subunit HslV 0.17 EFB2_04703 Ferrous-iron efflux pump FieF low > 86
Escherichia coli BL21 0.66 ECD_03817 peptidase component of the HslUV protease 0.17 ECD_03800 ferrous iron and zinc transporter low > 61
Escherichia coli ECOR38 0.66 HEPCGN_12380 hslV ATP-dependent protease subunit HslV 0.17 HEPCGN_12480 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia coli Nissle 1917 0.66 ECOLIN_RS22640 ATP-dependent protease subunit HslV 0.17 ECOLIN_RS22550 CDF family cation-efflux transporter FieF low > 55
Escherichia coli ECOR27 0.66 NOLOHH_05880 hslV ATP-dependent protease subunit HslV 0.17 NOLOHH_05970 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli ECRC100 0.66 OKFHMN_13735 hslV ATP-dependent protease subunit HslV 0.17 OKFHMN_13835 fieF CDF family cation-efflux transporter FieF low > 80
Escherichia coli ECRC101 0.66 MCAODC_04235 hslV ATP-dependent protease subunit HslV 0.17 MCAODC_04335 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia coli ECRC102 0.66 NIAGMN_11490 hslV ATP-dependent protease subunit HslV 0.17 NIAGMN_11590 fieF CDF family cation-efflux transporter FieF
Escherichia coli BW25113 0.66 b3932 hslV ATP-dependent protease peptidase subunit (NCBI) 0.17 b3915 fieF ferrous iron efflux protein F (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13515 HslU--HslV peptidase proteolytic subunit 0.15 CSW01_13580 cation-efflux pump FieF low > 62
Escherichia coli ECRC62 0.66 BNILDI_05650 hslV ATP-dependent protease subunit HslV 0.17 BNILDI_05555 fieF CDF family cation-efflux transporter FieF low > 75
Pantoea sp. MT58 0.66 IAI47_00850 ATP-dependent protease subunit HslV 0.18 IAI47_00775 CDF family cation-efflux transporter FieF low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04537 ATP-dependent protease subunit HslV 0.17 MPMX20_04553 Ferrous-iron efflux pump FieF low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4405 ATP-dependent protease HslVU, peptidase subunit 0.53 EX28DRAFT_3666 cation diffusion facilitator family transporter low > 76
Shewanella sp. ANA-3 0.65 Shewana3_3699 ATP-dependent protease peptidase subunit (RefSeq) 0.18 Shewana3_0255 cation diffusion facilitator family transporter (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO4162 hslV ATP-dependent protease HslV (NCBI ptt file) 0.18 SO4475 cation efflux family protein (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS01965 ATP-dependent protease subunit HslV 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas fluorescens SBW25 0.65 PFLU_RS01965 ATP-dependent protease subunit HslV 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas simiae WCS417 0.65 PS417_01920 ATP-dependent protease subunit HslV 0.18 PS417_24560 ferrous iron transporter low > 88
Klebsiella michiganensis M5al 0.65 BWI76_RS00755 ATP-dependent protease subunit HslV 0.59 BWI76_RS13865 cation diffusion facilitator family transporter low > 92
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_12430 ATP-dependent protease subunit HslV 0.17 AO353_06310 ferrous iron transporter
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1552 ATP-dependent protease HslV (EC 3.4.25.-) 0.18 Pf1N1B4_2726 Cobalt-zinc-cadmium resistance protein
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_3341 ATP-dependent protease HslVU, peptidase subunit 0.13 Ga0059261_1887 cation diffusion facilitator family transporter low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS12390 ATP-dependent protease subunit HslV 0.18 A4249_RS11365 cation diffusion facilitator family transporter low > 48
Pseudomonas sp. S08-1 0.61 OH686_10095 ATP-dependent protease HslVU, peptidase subunit 0.16 OH686_08810 Ferrous-iron efflux pump FieF low > 80
Pseudomonas putida KT2440 0.61 PP_5000 peptidase component of the ATP-dependent HslVU protease 0.17 PP_4774 divalent cation efflux transporter low > 96
Sinorhizobium meliloti 1021 0.61 SMc02575 ATP-dependent protease peptidase subunit 0.16 SMc02724 hypothetical protein low > 103
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B 0.17 Psyr_4333 Cation efflux protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B 0.17 Psyr_4333 Cation efflux protein low > 86
Rhodospirillum rubrum S1H 0.60 Rru_A3599 20S proteasome, A and B subunits (NCBI) 0.20 Rru_A2628 Cation efflux protein (NCBI) low > 58
Pseudomonas sp. RS175 0.59 PFR28_04999 ATP-dependent protease subunit HslV 0.17 PFR28_03835 Ferrous-iron efflux pump FieF
Pseudomonas stutzeri RCH2 0.59 Psest_3936 ATP-dependent protease HslVU, peptidase subunit 0.17 Psest_0573 cation diffusion facilitator family transporter low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.59 DVU1577 hslV ATP-dependent protease hslV (TIGR) 0.12 DVU0164 cation efflux family protein (TIGR) low > 55
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_289 ATP-dependent protease HslV (EC 3.4.25.-) 0.17 PfGW456L13_1393 Cobalt-zinc-cadmium resistance protein
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3769 ATP-dependent protease HslV (EC 3.4.25.-) 0.17 Pf6N2E2_5036 Cobalt-zinc-cadmium resistance protein
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09455 ATP-dependent protease subunit HslV 0.17 AO356_15475 ferrous iron transporter low > 104
Magnetospirillum magneticum AMB-1 0.57 AMB_RS22950 HslU--HslV peptidase proteolytic subunit 0.22 AMB_RS05165 cation transporter
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF2314 ATP-dependent protease HslV (EC 3.4.25.-) 0.17 GFF2282 Cobalt-zinc-cadmium resistance protein low > 78
Agrobacterium fabrum C58 0.56 Atu0044 heat shock protein hslV 0.19 Atu2274 cation efflux system protein low > 89
Caulobacter crescentus NA1000 0.56 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV 0.17 CCNA_03756 cation efflux family transporter low > 66
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV 0.17 CCNA_03756 cation efflux family transporter
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_3885 ATP-dependent protease HslVU, peptidase subunit 0.19 Echvi_4463 cation diffusion facilitator family transporter low > 79
Azospirillum sp. SherDot2 0.54 MPMX19_02548 ATP-dependent protease subunit HslV 0.18 MPMX19_00714 Ferrous-iron efflux pump FieF low > 112
Phaeobacter inhibens DSM 17395 0.52 PGA1_c35260 ATP-dependent protease HslV 0.17 PGA1_c01130 putative cation efflux pump low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_04815 ATP-dependent protease subunit HslV 0.19 CA264_04200 cation-efflux pump low > 74

Not shown: 23 genomes with orthologs for HSERO_RS00910 only; 10 genomes with orthologs for HSERO_RS02620 only