| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS12495 | | putrescine ABC transporter ATP-binding subunit PotG | 1.0 | HER17_RS19685 | | TRAP transporter large permease | 0.55 | 7 |
| Rahnella sp. WP5 | 0.91 | EX31_RS09625 | | putrescine ABC transporter ATP-binding subunit PotG | 0.91 | EX31_RS08020 | | TRAP transporter large permease | low | > 89 |
| Pantoea sp. MT58 | 0.89 | IAI47_13040 | | putrescine ABC transporter ATP-binding subunit PotG | 0.82 | IAI47_03220 | | TRAP transporter large permease | low | > 76 |
| Escherichia coli BL21 | 0.89 | ECD_00860 | | putrescine ABC transporter ATPase | 0.29 | ECD_03430 | | 2,3-diketo-L-gulonate TRAP transporter large permease protein | low | > 61 |
| Escherichia coli BW25113 | 0.89 | b0855 | potG | ATP-binding component of putrescine transport system (VIMSS) | 0.29 | b3578 | yiaN | predicted transporter (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.89 | OHPLBJKB_02813 | | Spermidine/putrescine import ATP-binding protein PotA | 0.39 | OHPLBJKB_03837 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 73 |
| Escherichia fergusonii Becca | 0.89 | EFB2_03206 | | Spermidine/putrescine import ATP-binding protein PotA | 0.30 | EFB2_00228 | | Sialic acid TRAP transporter large permease protein SiaM | low | > 86 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_01496 | | Spermidine/putrescine import ATP-binding protein PotA | 0.88 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 85 |
| Escherichia coli ECRC62 | 0.89 | BNILDI_20580 | potG | putrescine ABC transporter ATP-binding subunit PotG | 0.39 | BNILDI_07135 | | TRAP transporter large permease | low | > 75 |
| Escherichia coli ECOR27 | 0.89 | NOLOHH_22325 | potG | putrescine ABC transporter ATP-binding subunit PotG | 0.42 | NOLOHH_11090 | dctQ | Tripartite ATP-independent periplasmic transporter, DctM component | low | > 75 |
| Escherichia coli Nissle 1917 | 0.89 | ECOLIN_RS04555 | | putrescine ABC transporter ATP-binding subunit PotG | 0.38 | ECOLIN_RS17390 | | TRAP transporter large permease subunit | — | — |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS09465 | | polyamine ABC transporter ATP-binding protein | 0.42 | BWI76_RS24135 | | c4-dicarboxylate permease | low | > 92 |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_02075 | potG | putrescine ABC transporter ATP-binding subunit PotG | 0.30 | HEPCGN_01270 | | C4-dicarboxylate ABC transporter | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.88 | GFF759 | | Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) | 0.40 | GFF2273 | | Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC | low | > 78 |
| Shewanella amazonensis SB2B | 0.60 | Sama_2641 | | polyamine ABC transporter, ATP-binding protein (RefSeq) | 0.26 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0974 | | spermidine/putrescine ABC transporter ATPase subunit (RefSeq) | 0.25 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | low | > 60 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3096 | | spermidine/putrescine ABC transporter ATPase subunit (RefSeq) | 0.30 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.59 | SO1271 | | polyamine ABC transporter, ATP-binding protein (NCBI ptt file) | 0.30 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.58 | HP15_939 | | spermidine/putrescine ABC transporter ATPase subunit | 0.22 | HP15_4074 | | C4-dicarboxylate transport system (permease large protein) | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_4282 | | spermidine/putrescine ABC transporter ATP-binding subunit | 0.73 | Psest_0361 | | TRAP transporter, DctM subunit | low | > 67 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.58 | H281DRAFT_05181 | | putrescine transport system ATP-binding protein | 0.32 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.57 | Xcc-8004.2210.1 | | Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) | 0.38 | Xcc-8004.203.1 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.57 | ABIE53_002369 | | putrescine transport system ATP-binding protein | 0.32 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | low | > 113 |
| Pseudomonas putida KT2440 | 0.57 | PP_5179 | | spermidine/putrescine ABC transporter - ATP binding subunit | 0.74 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS23145 | | putrescine/spermidine ABC transporter ATP-binding protein | 0.32 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | — | — |
| Pseudomonas simiae WCS417 | 0.56 | PS417_27115 | | putrescine ABC transporter, ATPase component (from data) | 0.74 | PS417_17380 | | membrane protein | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS28765 | | polyamine ABC transporter ATP-binding protein | 0.74 | PFLU_RS19305 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS28765 | | polyamine ABC transporter ATP-binding protein | 0.74 | PFLU_RS19305 | | TRAP transporter large permease | low | > 109 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A1017 | | Spermidine/putrescine ABC transporter ATP-binding subunit (NCBI) | 0.33 | Rru_A3676 | | TRAP dicarboxylate transporter, DctM subunit (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.55 | AZOBR_RS08840 | | ABC transporter ATP-binding protein | 0.40 | AZOBR_RS30120 | | C4-dicarboxylate ABC transporter permease | low | > 97 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_13165 | | transporter | 0.75 | AO356_23045 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_04293 | | Spermidine/putrescine import ATP-binding protein PotA | 0.72 | PFR28_02440 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_4515 | | Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) | 0.72 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Azospirillum sp. SherDot2 | 0.55 | MPMX19_04882 | | Spermidine/putrescine import ATP-binding protein PotA | 0.40 | MPMX19_05803 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.55 | AMB_RS13205 | | polyamine ABC transporter ATP-binding protein | 0.34 | AMB_RS04550 | | C4-dicarboxylate ABC transporter permease | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.54 | SMc00771 | | putrescine ABC transporter ATP-binding protein | 0.42 | SM_b21351 | | C4-dicarboxylate large membrane transport protein | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_4863 | | Spermidine/putrescine ABC transporter ATP-binding subunit | 0.73 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_4863 | | Spermidine/putrescine ABC transporter ATP-binding subunit | 0.73 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.53 | GFF2034 | | Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) | 0.44 | GFF795 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 90 |
| Rhizobium sp. OAE497 | 0.52 | ABIE40_RS03270 | | ABC transporter ATP-binding protein | 0.33 | ABIE40_RS25810 | | TRAP transporter large permease | low | > 107 |
| Agrobacterium fabrum C58 | 0.51 | Atu0610 | | ABC transporter, nucleotide binding/ATPase protein | 0.45 | Atu3135 | | ABC transporter permease | low | > 89 |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS02365 | | polyamine ABC transporter ATP-binding protein | 0.33 | ABCV34_RS05060 | | TRAP transporter large permease | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.49 | PGA1_c34430 | | putrescine transport ATP-binding protein PotG | 0.28 | PGA1_c20660 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) | low | > 62 |
| Bosea sp. OAE506 | 0.49 | ABIE41_RS21645 | | ABC transporter ATP-binding protein | 0.47 | ABIE41_RS07820 | | TRAP transporter large permease | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.48 | CCNA_03235 | | spermidine/putrescine transport ATP-binding protein potA | 0.42 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 67 |
| Caulobacter crescentus NA1000 | 0.48 | CCNA_03235 | | spermidine/putrescine transport ATP-binding protein potA | 0.42 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_021565 | | ABC transporter ATP-binding protein | 0.35 | TX73_010560 | | TRAP transporter large permease subunit | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_1610 | | Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) | 0.73 | Ac3H11_3955 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 79 |
| Dinoroseobacter shibae DFL-12 | 0.34 | Dshi_1055 | | ABC transporter related (RefSeq) | 0.35 | Dshi_2753 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 64 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.22 | Echvi_1022 | | ABC-type spermidine/putrescine transport systems, ATPase components | 0.35 | Echvi_3627 | | TRAP transporter, DctM subunit | low | > 79 |
Not shown: 15 genomes with orthologs for HER17_RS12495 only; 11 genomes with orthologs for HER17_RS19685 only