Conservation of cofitness between HER17_RS15910 and HER17_RS13460 in Pectobacterium carotovorum WPP14

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15910 2-dehydropantoate 2-reductase 1.0 HER17_RS13460 biotin synthase BioB 0.93 4
Dickeya dianthicola ME23 0.79 DZA65_RS05940 2-dehydropantoate 2-reductase 0.92 DZA65_RS08965 biotin synthase BioB 0.60 72
Dickeya dadantii 3937 0.79 DDA3937_RS05555 2-dehydropantoate 2-reductase 0.92 DDA3937_RS08510 biotin synthase BioB low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS05615 2-dehydropantoate 2-reductase 0.92 HGI48_RS08675 biotin synthase BioB 0.78 34
Serratia liquefaciens MT49 0.69 IAI46_04950 2-dehydropantoate 2-reductase 0.89 IAI46_06525 biotin synthase BioB low > 86
Enterobacter sp. TBS_079 0.63 MPMX20_01016 2-dehydropantoate 2-reductase 0.84 MPMX20_01403 Biotin synthase low > 85
Klebsiella michiganensis M5al 0.63 BWI76_RS06405 2-dehydropantoate 2-reductase 0.85 BWI76_RS08760 biotin synthase low > 92
Enterobacter asburiae PDN3 0.63 EX28DRAFT_2546 2-dehydropantoate 2-reductase 0.84 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) 0.73 9
Rahnella sp. WP5 0.63 EX31_RS22180 2-dehydropantoate 2-reductase 0.90 EX31_RS23695 biotin synthase BioB low > 89
Escherichia coli ECOR38 0.63 HEPCGN_07025 panE 2-dehydropantoate 2-reductase 0.86 HEPCGN_01640 bioB biotin synthase BioB low > 87
Escherichia fergusonii Becca 0.63 EFB2_03632 2-dehydropantoate 2-reductase 0.86 EFB2_03330 Biotin synthase low > 86
Escherichia coli Nissle 1917 0.63 ECOLIN_RS02560 2-dehydropantoate 2-reductase 0.86 ECOLIN_RS04130 biotin synthase BioB low > 55
Escherichia coli BL21 0.63 ECD_00373 2-dehydropantoate reductase, NADPH-specific 0.86 ECD_00742 biotin synthase low > 61
Escherichia coli BW25113 0.63 b0425 panE 2-dehydropantoate 2-reductase (NCBI) 0.86 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECOR27 0.62 NOLOHH_01345 panE 2-dehydropantoate 2-reductase 0.86 NOLOHH_22770 bioB biotin synthase BioB 0.69 23
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03251 2-dehydropantoate 2-reductase 0.86 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia coli ECRC62 0.62 BNILDI_22760 panE 2-dehydropantoate 2-reductase 0.86 BNILDI_21040 bioB biotin synthase BioB low > 75
Escherichia coli ECRC101 0.61 MCAODC_27620 panE 2-dehydropantoate 2-reductase 0.86 MCAODC_25615 bioB biotin synthase BioB 0.84 7
Escherichia coli ECRC100 0.61 OKFHMN_08395 panE 2-dehydropantoate 2-reductase 0.86 OKFHMN_06400 bioB biotin synthase BioB low > 80
Escherichia coli ECRC98 0.61 JDDGAC_12050 panE 2-dehydropantoate 2-reductase 0.86 JDDGAC_10035 bioB biotin synthase BioB low > 86
Escherichia coli ECRC99 0.61 KEDOAH_19570 panE 2-dehydropantoate 2-reductase 0.86 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC102 0.61 NIAGMN_06450 panE 2-dehydropantoate 2-reductase 0.86 NIAGMN_04445 bioB biotin synthase BioB — —
Pantoea sp. MT58 0.61 IAI47_14715 2-dehydropantoate 2-reductase 0.85 IAI47_13530 biotin synthase BioB low > 76
Erwinia tracheiphila SCR3 0.58 LU632_RS18455 panE 2-dehydropantoate 2-reductase 0.87 LU632_RS09130 bioB biotin synthase BioB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4336 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.84 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_11730 2-dehydropantoate 2-reductase 0.70 CSW01_05645 biotin synthase low > 62
Pseudomonas stutzeri RCH2 0.25 Psest_1140 2-dehydropantoate 2-reductase 0.69 Psest_0411 biotin synthetase low > 67
Shewanella sp. ANA-3 0.25 Shewana3_0780 2-dehydropantoate 2-reductase (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.24 SO3817 panE 2-dehydropantoate 2-reductase (NCBI ptt file) 0.66 SO2740 bioB biotin synthase (NCBI ptt file) — —
Pseudomonas sp. S08-1 0.24 OH686_08220 2-dehydropantoate 2-reductase 0.68 OH686_10355 biotin synthase 0.71 76
Shewanella amazonensis SB2B 0.22 Sama_2559 2-dehydropantoate 2-reductase (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_17955 2-dehydropantoate 2-reductase 0.67 AO356_14135 biotin synthase low > 104
Pseudomonas simiae WCS417 0.21 PS417_22515 2-dehydropantoate 2-reductase 0.67 PS417_26005 biotin synthase 0.14 42
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_1839 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.67 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_03645 2-dehydropantoate 2-reductase 0.67 AO353_07525 biotin synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_5521 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.67 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.32 19
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_651 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.67 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Shewanella loihica PV-4 0.21 Shew_2895 2-dehydropantoate 2-reductase (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS24155 putative 2-dehydropantoate 2-reductase 0.67 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS24155 putative 2-dehydropantoate 2-reductase 0.67 PFLU_RS27650 biotin synthase BioB low > 109
Alteromonas macleodii MIT1002 0.20 MIT1002_01217 2-dehydropantoate 2-reductase 0.66 MIT1002_01379 Biotin synthase 0.73 8
Pseudomonas sp. RS175 0.20 PFR28_03426 2-dehydropantoate 2-reductase 0.68 PFR28_04103 Biotin synthase low > 88
Pseudomonas putida KT2440 0.20 PP_1351 putative 2-dehydropantoate 2-reductase 0.68 PP_0362 Biotin synthase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_4088 ketopantoate reductase 0.66 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_4088 ketopantoate reductase 0.66 Psyr_4687 biotin synthase low > 86
Marinobacter adhaerens HP15 0.19 HP15_1312 2-dehydropantoate 2-reductase 0.64 HP15_2486 biotin synthase low > 73
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09230 2-dehydropantoate 2-reductase 0.54 HSERO_RS12235 biotin synthase low > 78
Variovorax sp. OAS795 0.14 ABID97_RS24580 2-dehydropantoate 2-reductase 0.54 ABID97_RS13955 biotin synthase BioB low > 91
Methanococcus maripaludis S2 0.13 MMP_RS03525 ketopantoate reductase family protein 0.18 MMP_RS06370 biotin synthase BioB low > 25
Cupriavidus basilensis FW507-4G11 0.13 RR42_RS32960 2-dehydropantoate 2-reductase 0.55 RR42_RS00940 biotin synthase low > 128
Methanococcus maripaludis JJ 0.13 MMJJ_RS01525 ketopantoate reductase family protein 0.18 MMJJ_RS07980 biotin synthase BioB low > 28
Variovorax sp. SCN45 0.12 GFF3590 2-dehydropantoate 2-reductase (EC 1.1.1.169) 0.54 GFF937 Biotin synthase (EC 2.8.1.6) 0.44 25
Ralstonia sp. UNC404CL21Col 0.12 ABZR87_RS15450 2-dehydropantoate 2-reductase 0.59 ABZR87_RS06265 biotin synthase BioB low > 80
Rhodanobacter denitrificans MT42 0.10 LRK55_RS02820 2-dehydropantoate 2-reductase 0.54 LRK55_RS09900 biotin synthase BioB low > 63
Rhodanobacter denitrificans FW104-10B01 0.10 LRK54_RS03070 2-dehydropantoate 2-reductase 0.54 LRK54_RS10260 biotin synthase BioB low > 59
Burkholderia phytofirmans PsJN 0.10 BPHYT_RS21975 2-dehydropantoate 2-reductase 0.56 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia graminis OAS925 0.09 ABIE53_004184 2-dehydropantoate 2-reductase 0.57 ABIE53_000577 biotin synthase low > 113
Rhodanobacter sp. FW510-T8 0.09 OKGIIK_09940 panE 2-dehydropantoate 2-reductase 0.53 OKGIIK_13650 bioB biotin synthase BioB low > 52
Ralstonia solanacearum GMI1000 0.08 RS_RS00860 2-dehydropantoate 2-reductase 0.58 RS_RS01305 biotin synthase low > 80

Not shown: 2 genomes with orthologs for HER17_RS15910 only; 34 genomes with orthologs for HER17_RS13460 only