| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS19675 | | TRAP transporter substrate-binding protein | 1.0 | HER17_RS10860 | | endonuclease III | 0.57 | 7 |
| Rahnella sp. WP5 | 0.80 | EX31_RS08010 | | TRAP transporter substrate-binding protein | 0.89 | EX31_RS06590 | | endonuclease III | low | > 89 |
| Enterobacter sp. TBS_079 | 0.75 | MPMX20_04349 | | Solute-binding protein | 0.91 | MPMX20_02005 | | Endonuclease III | low | > 85 |
| Pantoea sp. MT58 | 0.66 | IAI47_03230 | | TRAP transporter substrate-binding protein | 0.90 | IAI47_10475 | | endonuclease III | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_3957 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.66 | Ac3H11_1010 | | Endonuclease III (EC 4.2.99.18) | low | > 79 |
| Pseudomonas putida KT2440 | 0.50 | PP_1169 | | D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) | 0.73 | PP_1092 | | DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_0363 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.72 | Psest_3118 | | endonuclease III | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_487 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.75 | Pf6N2E2_5594 | | Endonuclease III (EC 4.2.99.18) | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_17370 | | C4-dicarboxylate ABC transporter | 0.73 | PS417_05655 | | endonuclease III | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.73 | PFLU_RS05740 | | endonuclease III | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS19295 | | TRAP transporter substrate-binding protein | 0.73 | PFLU_RS05740 | | endonuclease III | low | > 109 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_02438 | | Solute-binding protein | 0.74 | PFR28_03349 | | Endonuclease III | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.73 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0900 | | TRAP dicarboxylate transporter- DctP subunit | 0.73 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_23055 | | C4-dicarboxylate ABC transporter | 0.74 | AO356_18345 | | endonuclease III | low | > 104 |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS30130 | | C4-dicarboxylate ABC transporter | 0.59 | AZOBR_RS01565 | | endonuclease III | low | > 97 |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS07830 | | TRAP transporter substrate-binding protein | 0.56 | ABIE41_RS03410 | | endonuclease III | low | > 77 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF797 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.64 | GFF4003 | | Endonuclease III (EC 4.2.99.18) | low | > 90 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS10340 | | TRAP transporter substrate-binding protein | 0.62 | ABID97_RS17315 | | endonuclease III | low | > 91 |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_05801 | | Solute-binding protein | 0.60 | MPMX19_02500 | | Endonuclease III | low | > 112 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_006502 | | tripartite ATP-independent transporter DctP family solute receptor | 0.70 | ABIE53_001423 | | endonuclease-3 | low | > 113 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_01513 | | C4-dicarboxylate-binding protein | 0.52 | CCNA_03847 | | endonuclease III | low | > 66 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_05324 | | tripartite ATP-independent transporter solute receptor, DctP family | 0.70 | H281DRAFT_00293 | | DNA-(apurinic or apyrimidinic site) lyase /endonuclease III | low | > 103 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_01513 | | C4-dicarboxylate-binding protein | 0.52 | CCNA_03847 | | endonuclease III | low | > 67 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_02426 | | Extracytoplasmic solute receptor protein YiaO | 0.33 | MIT1002_01251 | | Endonuclease III | low | > 70 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_03838 | | Solute-binding protein | 0.92 | OHPLBJKB_02093 | | Endonuclease III | low | > 73 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_07130 | | Bacterial extracellular solute-binding protein, family 7 | 0.92 | BNILDI_16835 | nth | endonuclease III | low | > 75 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS24175 | | C4-dicarboxylate ABC transporter | 0.70 | BPHYT_RS06080 | | endonuclease IV | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF3130 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.93 | GFF3641 | | Endonuclease III (EC 4.2.99.18) | 0.36 | 57 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS24125 | | hypothetical protein | 0.92 | BWI76_RS16385 | | endonuclease III | — | — |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS21090 | | TRAP transporter substrate-binding protein | 0.70 | ABZR87_RS09915 | | endonuclease III | low | > 80 |
| Variovorax sp. SCN45 | 0.28 | GFF2918 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.63 | GFF418 | | Endonuclease III (EC 4.2.99.18) | low | > 127 |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS17380 | | TRAP transporter substrate-binding protein | 0.92 | ECOLIN_RS09110 | | endonuclease III | — | — |
| Lysobacter sp. OAE881 | 0.28 | ABIE51_RS02850 | | TRAP transporter substrate-binding protein | 0.65 | ABIE51_RS07560 | | endonuclease III | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.27 | Echvi_3629 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.39 | Echvi_1263 | | endonuclease III | low | > 79 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.201.1 | | TRAP-type C4-dicarboxylate transport system, periplasmic component | 0.72 | Xcc-8004.3350.1 | | Endonuclease III (EC 4.2.99.18) | low | > 74 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_00375 | | TRAP transporter substrate-binding protein | 0.90 | IAI46_11455 | | endonuclease III | low | > 86 |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_18535 | | Bacterial extracellular solute-binding protein, family 7 | 0.92 | HEPCGN_05910 | nth | endonuclease III | low | > 87 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_11100 | | Bacterial extracellular solute-binding protein, family 7 | 0.92 | NOLOHH_18045 | nth | endonuclease III | — | — |
| Escherichia fergusonii Becca | 0.24 | EFB2_00227 | | 2,3-diketo-L-gulonate-binding periplasmic protein YiaO | 0.92 | EFB2_02359 | | Endonuclease III | low | > 86 |
| Escherichia coli BL21 | 0.24 | ECD_03431 | | 2,3-diketo-L-gulonate-binding periplasmic protein | 0.92 | ECD_01603 | | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) | — | — |
| Escherichia coli BW25113 | 0.24 | b3579 | yiaO | predicted transporter (NCBI) | 0.92 | b1633 | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS11540 | | TRAP transporter substrate-binding protein | 0.62 | ABCV34_RS08465 | | endonuclease III | low | > 48 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS04240 | | C4-dicarboxylate ABC transporter | 0.76 | HSERO_RS08070 | | endonuclease IV | low | > 78 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3678 | | TRAP dicarboxylate transporter- DctP subunit (NCBI) | 0.56 | Rru_A0153 | | Endonuclease III/Nth (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.20 | AMB_RS04560 | | C4-dicarboxylate ABC transporter | 0.59 | AMB_RS21105 | | endonuclease III | low | > 64 |
| Vibrio cholerae E7946 ATCC 55056 | 0.20 | CSW01_08925 | | sialic acid-binding protein | 0.84 | CSW01_05145 | | endonuclease III | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.19 | HUW76_03965 | | TRAP transporter substrate-binding protein DctP | 0.41 | HUW76_00260 | | endonuclease III | low | > 35 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3326 | | TRAP dicarboxylate transporter, DctP subunit (RefSeq) | 0.55 | Dshi_3023 | | endonuclease III (RefSeq) | low | > 64 |
| Cupriavidus basilensis FW507-4G11 | 0.18 | RR42_RS10600 | | C4-dicarboxylate ABC transporter substrate-binding protein | 0.70 | RR42_RS05970 | | endonuclease III | low | > 128 |
| Dechlorosoma suillum PS | 0.18 | Dsui_3155 | | tripartite ATP-independent periplasmic transporter solute receptor, DctP family | 0.69 | Dsui_2985 | | endonuclease III | low | > 51 |
| Shewanella amazonensis SB2B | 0.15 | Sama_2209 | | alpha-ketoglutarate TRAP transporter, solute receptor component (from data) | 0.82 | Sama_1836 | | endonuclease III (RefSeq) | low | > 62 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c20680 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) | 0.55 | PGA1_c29040 | | endonuclease III | low | > 62 |
| Pseudomonas sp. S08-1 | 0.11 | OH686_16140 | | TRAP-type transporter, substrate-binding protein | 0.75 | OH686_03910 | | endonuclease III | low | > 80 |
Not shown: 6 genomes with orthologs for HER17_RS19675 only; 42 genomes with orthologs for HER17_RS10860 only