Conservation of cofitness between HER17_RS06930 and HER17_RS04240 in Pectobacterium carotovorum WPP14

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06930 50S ribosomal protein L3 N(5)-glutamine methyltransferase 1.0 HER17_RS04240 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.91 3
Dickeya dadantii 3937 0.90 DDA3937_RS14585 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.87 DDA3937_RS16940 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Dickeya dianthicola ME23 0.90 DZA65_RS15470 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.87 DZA65_RS18085 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 75
Dickeya dianthicola 67-19 0.90 HGI48_RS14535 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.87 HGI48_RS17010 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 71
Serratia liquefaciens MT49 0.86 IAI46_18030 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.87 IAI46_03690 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 86
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0274 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.85 EX28DRAFT_2852 sulfite reductase (NADPH) hemoprotein, beta-component low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03265 50S ribosomal protein L3 glutamine methyltransferase 0.85 MPMX20_03642 Sulfite reductase [NADPH] hemoprotein beta-component 0.25 27
Rahnella sp. WP5 0.84 EX31_RS19690 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.85 EX31_RS07900 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.69 14
Klebsiella michiganensis M5al 0.84 BWI76_RS20440 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 BWI76_RS22760 sulfite reductase subunit beta 0.56 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.84 GFF4819 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 78
Escherichia fergusonii Becca 0.82 EFB2_01528 50S ribosomal protein L3 glutamine methyltransferase 0.84 EFB2_01154 Sulfite reductase [NADPH] hemoprotein beta-component low > 86
Escherichia coli BW25113 0.82 b2330 yfcB putative adenine-specific methylase (VIMSS) 0.84 b2763 cysI sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_01375 50S ribosomal protein L3 glutamine methyltransferase 0.85 OHPLBJKB_00970 Sulfite reductase [NADPH] hemoprotein beta-component low > 73
Escherichia coli ECRC102 0.82 NIAGMN_20385 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 NIAGMN_18145 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit
Escherichia coli ECRC99 0.82 KEDOAH_05585 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 KEDOAH_07750 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit
Escherichia coli Nissle 1917 0.82 ECOLIN_RS13495 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 ECOLIN_RS15405 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 55
Escherichia coli ECRC101 0.82 MCAODC_13650 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 MCAODC_10900 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 87
Escherichia coli ECRC100 0.82 OKFHMN_22610 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 OKFHMN_20375 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 80
Escherichia coli ECRC98 0.82 JDDGAC_26570 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 JDDGAC_24040 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 86
Escherichia coli BL21 0.82 ECD_02255 N5-glutamine methyltransferase 0.84 ECD_02608 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding low > 61
Escherichia coli ECOR38 0.82 HEPCGN_21815 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 HEPCGN_19090 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 87
Erwinia tracheiphila SCR3 0.82 LU632_RS07770 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.83 LU632_RS06405 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Pantoea sp. MT58 0.82 IAI47_06145 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 IAI47_04155 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 76
Escherichia coli ECRC62 0.82 BNILDI_13165 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 BNILDI_10740 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.81 10
Escherichia coli ECOR27 0.81 NOLOHH_14245 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.84 NOLOHH_12190 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 75
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10570 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.74 CSW01_02015 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 62
Shewanella loihica PV-4 0.64 Shew_2417 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.57 Shew_0666 sulfite reductase subunit beta (RefSeq) low > 60
Shewanella amazonensis SB2B 0.63 Sama_2160 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.71 Sama_2838 sulfite reductase subunit beta (RefSeq) low > 62
Shewanella sp. ANA-3 0.63 Shewana3_1468 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.59 Shewana3_0856 sulfite reductase subunit beta (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO3080 hemK family protein (NCBI ptt file) 0.58 SO3737 cysI sulfite reductase (NADPH) hemoprotein beta-component (cysI) (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_01228 50S ribosomal protein L3 glutamine methyltransferase 0.76 MIT1002_03379 Sulfite reductase [NADPH] hemoprotein beta-component
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_5819 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.06 Pf6N2E2_2073 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 103
Pseudomonas sp. RS175 0.54 PFR28_03129 50S ribosomal protein L3 glutamine methyltransferase 0.06 PFR28_01366 Sulfite reductase [ferredoxin] low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_19525 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.06 AO356_00555 sulfite reductase low > 104
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_02265 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.06 AO353_22800 sulfite reductase low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3777 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.06 Pf1N1B4_5665 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 87
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.06 Psyr_2462 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.06 Psyr_2462 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region low > 86
Pseudomonas fluorescens SBW25 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.06 PFLU_RS12980 nitrite/sulfite reductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.06 PFLU_RS12980 nitrite/sulfite reductase low > 109
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4168 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.06 PfGW456L13_2843 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 87
Pseudomonas simiae WCS417 0.53 PS417_19330 SAM-dependent methyltransferase 0.06 PS417_12290 sulfite reductase
Pseudomonas putida KT2440 0.53 PP_1827 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.06 PP_2371 Sulphite reductase hemoprotein, beta subunit low > 96
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_1297 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-) 0.48 B158DRAFT_2161 sulfite reductase (NADPH) beta subunit (EC 1.8.1.2) low > 40
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1953.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.45 Xcc-8004.1257.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 74
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS08050 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.49 ABZR86_RS05900 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Castellaniella sp019104865 MT123 0.45 ABCV34_RS05175 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.46 ABCV34_RS00215 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 48
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_04795 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.45 OKGIIK_05965 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 52
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01735 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.45 LRK54_RS00925 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 59
Azospirillum sp. SherDot2 0.43 MPMX19_00751 50S ribosomal protein L3 glutamine methyltransferase 0.08 MPMX19_00652 Sulfite reductase [ferredoxin] low > 112
Dechlorosoma suillum PS 0.43 Dsui_2712 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.07 Dsui_1986 sulfite reductase, beta subunit (hemoprotein)
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS10785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.09 HSERO_RS15550 sulfite reductase low > 78
Lysobacter sp. OAE881 0.42 ABIE51_RS08215 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.47 ABIE51_RS15830 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 62
Paraburkholderia graminis OAS925 0.42 ABIE53_002520 ribosomal protein L3 glutamine methyltransferase 0.06 ABIE53_001226 sulfite reductase (NADPH) hemoprotein beta-component low > 113
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS00290 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.07 RALBFv3_RS04600 sulfite reductase low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS13620 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.07 UW163_RS09070 sulfite reductase
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17185 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.07 RPSI07_RS12775 nitrite/sulfite reductase low > 81
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11740 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.07 ABZR87_RS00210 nitrite/sulfite reductase low > 80
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12205 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.06 BPHYT_RS22415 nitrite reductase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00596 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.06 H281DRAFT_00114 sulfite reductase (NADPH) beta subunit low > 103

Not shown: 14 genomes with orthologs for HER17_RS06930 only; 8 genomes with orthologs for HER17_RS04240 only