Conservation of cofitness between HER17_RS00780 and HER17_RS04110 in Pectobacterium carotovorum WPP14

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00780 N-carbamoylputrescine amidase 1.0 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 12
Dickeya dadantii 3937 0.95 DDA3937_RS00850 N-carbamoylputrescine amidase 0.73 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Dickeya dianthicola 67-19 0.94 HGI48_RS20525 N-carbamoylputrescine amidase 0.73 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Dickeya dianthicola ME23 0.94 DZA65_RS21570 N-carbamoylputrescine amidase 0.73 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Rahnella sp. WP5 0.90 EX31_RS21185 N-carbamoylputrescine amidase 0.67 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_4933 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_4933 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.65 Psest_4290 N-carbamoylputrescine amidase 0.35 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA low > 67
Azospirillum brasilense Sp245 0.65 AZOBR_RS08170 carbon-nitrogen family hydrolase 0.18 AZOBR_RS01195 RNA methyltransferase low > 97
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_1662 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) 0.32 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_11910 N-carbamoylputrescine amidase 0.31 AO353_02715 23S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.64 PFR28_04896 N-carbamoyl-D-amino acid hydrolase 0.31 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 88
Desulfovibrio vulgaris Miyazaki F 0.63 DvMF_0653 N-carbamoylputrescine amidase (RefSeq) 0.19 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) low > 51
Azospirillum sp. SherDot2 0.63 MPMX19_01284 N-carbamoyl-D-amino acid hydrolase 0.16 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 112
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_2704 N-carbamoylputrescine amidase (3.5.1.53) 0.31 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 87
Pseudomonas sp. S08-1 0.63 OH686_11500 N-carbamoylputrescine amidase 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA low > 80
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1813 N-carbamoylputrescine amidase 0.38 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA low > 40
Caulobacter crescentus NA1000 0.53 CCNA_00212 N-carbamoylputrescine amidase 0.15 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein — —
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_00212 N-carbamoylputrescine amidase 0.15 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.52 A4249_RS11135 N-carbamoylputrescine amidase 0.13 A4249_RS08425 class I SAM-dependent RNA methyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_1979 N-carbamoylputrescine amidase 0.16 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS18075 carbon-nitrogen hydrolase 0.16 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS15465 acyltransferase 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Marinobacter adhaerens HP15 0.37 HP15_2074 carbon-nitrogen hydrolase family protein 0.37 HP15_790 23S rRNA 5-methyluridine methyltransferase low > 73
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS01170 carbon-nitrogen hydrolase 0.16 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 19
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS04375 carbon-nitrogen hydrolase 0.16 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 67
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS16695 carbon-nitrogen hydrolase 0.15 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 72
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS14235 carbon-nitrogen hydrolase 0.16 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 56
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS00340 carbon-nitrogen hydrolase 0.36 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Bacteroides thetaiotaomicron VPI-5482 0.35 BT0875 beta-ureidopropionase (NCBI ptt file) 0.15 BT0643 RNA methyltransferase (NCBI ptt file) 0.36 8
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00030 carbon-nitrogen hydrolase 0.37 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Bacteroides ovatus ATCC 8483 0.35 BACOVA_02592 hydrolase, carbon-nitrogen family 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA low > 94
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_06970 acyltransferase 0.35 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS02765 carbon-nitrogen hydrolase 0.36 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Lysobacter sp. OAE881 0.33 ABIE51_RS09320 carbon-nitrogen hydrolase 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_2145 hypothetical protein 0.22 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA low > 38
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.2374.1 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) — —
Alteromonas macleodii MIT1002 0.32 MIT1002_03761 N-carbamoyl-D-amino acid hydrolase 0.32 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 70
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS00250 hydratase 0.31 BPHYT_RS09125 23S rRNA methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_05434 Predicted amidohydrolase 0.30 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.24 92
Bosea sp. OAE506 0.17 ABIE41_RS22010 N-carbamoyl-D-amino-acid hydrolase 0.16 ABIE41_RS22255 RNA methyltransferase low > 77
Sinorhizobium meliloti 1021 0.17 SMc02442 hydrolase 0.18 SMc00974 RNA methyltransferase low > 103
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS27560 carbon-nitrogen hydrolase family protein 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas fluorescens SBW25 0.17 PFLU_RS27560 carbon-nitrogen hydrolase family protein 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 109
Pseudomonas putida KT2440 0.16 PP_0382 5-aminopentanamidase 0.31 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 96
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_14225 5-aminopentanamidase (EC 3.5.1.30) (from data) 0.31 AO356_19055 23S rRNA methyltransferase low > 104
Pseudomonas simiae WCS417 0.16 PS417_25915 carbon-nitrogen hydrolase 0.33 PS417_20155 23S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_4777 5-aminopentanamidase (EC 3.5.1.30) (from data) 0.32 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 low > 103
Castellaniella sp019104865 MT123 0.15 ABCV34_RS08035 N-carbamoyl-D-amino-acid hydrolase 0.34 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 48
Agrobacterium fabrum C58 0.14 Atu3510 amidohydrolase 0.15 Atu0735 RNA methyltransferase low > 89
Cupriavidus basilensis FW507-4G11 0.12 RR42_RS26020 hydrolase 0.31 RR42_RS13170 23S rRNA methyltransferase low > 128

Not shown: 1 genomes with orthologs for HER17_RS00780 only; 47 genomes with orthologs for HER17_RS04110 only