Conservation of cofitness between HER17_RS06010 and HER17_RS02580 in Pectobacterium carotovorum WPP14

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.71 7
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.84 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.84 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.84 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.84 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 86
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.82 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.75 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.81 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.79 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.84 OHPLBJKB_03871 tRNA dimethylallyltransferase — —
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.82 MPMX20_00452 tRNA dimethylallyltransferase 0.26 66
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.84 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.84 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.82 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.84 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase low > 61
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.84 EFB2_04364 tRNA dimethylallyltransferase low > 86
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.84 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Alteromonas macleodii MIT1002 0.70 MIT1002_02802 HTH-type transcriptional regulator IscR 0.55 MIT1002_03789 tRNA dimethylallyltransferase — —
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.83 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Shewanella amazonensis SB2B 0.66 Sama_1292 Rrf2 family protein (RefSeq) 0.60 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella loihica PV-4 0.66 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.61 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO2263 Rrf2 family protein (NCBI ptt file) 0.61 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.65 Shewana3_2281 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.60 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Pseudomonas sp. RS175 0.61 PFR28_00285 HTH-type transcriptional regulator IscR 0.59 PFR28_05120 tRNA dimethylallyltransferase low > 88
Pseudomonas sp. S08-1 0.61 OH686_17470 iron-sulfur cluster assembly transcription factor IscR 0.56 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_06650 transcriptional regulator 0.59 AO356_08660 tRNA dimethylallyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_15830 transcriptional regulator 0.60 AO353_13140 tRNA dimethylallyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.58 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas stutzeri RCH2 0.60 Psest_1250 iron-sulfur cluster assembly transcription factor IscR 0.57 Psest_0682 tRNA dimethylallyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.58 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas putida KT2440 0.59 PP_0841 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR 0.57 PP_4895 tRNA dimethylallyltransferase low > 96
Pseudomonas simiae WCS417 0.59 PS417_23205 transcriptional regulator 0.58 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase low > 88
Pseudomonas fluorescens SBW25 0.59 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.59 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.59 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.17 85
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1458 transcriptional regulator, BadM/Rrf2 family 0.56 B158DRAFT_1951 tRNA dimethylallyltransferase low > 40
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_866 Iron-sulfur cluster regulator IscR 0.60 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4874 Iron-sulfur cluster regulator IscR 0.60 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 87
Acinetobacter radioresistens SK82 0.50 MPMX26_01328 HTH-type transcriptional regulator IscR 0.43 MPMX26_01208 tRNA dimethylallyltransferase — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS15775 DNA-binding protein 0.50 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Marinobacter adhaerens HP15 0.49 HP15_1487 transcriptional regulator, BadM/Rrf2 family 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Dechlorosoma suillum PS 0.48 Dsui_2369 iron-sulfur cluster assembly transcription factor IscR 0.47 Dsui_1552 tRNA isopentenyltransferase MiaA — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS05100 Fe-S cluster assembly transcriptional regulator IscR 0.47 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Azospirillum sp. SherDot2 0.44 MPMX19_01654 HTH-type transcriptional regulator IscR 0.26 MPMX19_01778 tRNA dimethylallyltransferase — —
Rhodospirillum rubrum S1H 0.44 Rru_A2028 Transcriptional Regulator, BadM/Rrf2 family (NCBI) 0.20 Rru_A0466 tRNA isopentenyltransferase (NCBI) — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS05830 Rrf2 family transcriptional regulator 0.25 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS15265 Rrf2 family transcriptional regulator 0.26 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_1633 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.19 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c15350 putative transcriptional regulator 0.19 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA — —
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.24 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0529 rrf2 Rrf2 protein (voordouw) 0.28 DVU1533 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR) — —
Sinorhizobium meliloti 1021 0.22 SM_b20994 hypothetical protein 0.30 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Fusobacterium nucleatum SB010 0.22 HUW76_04175 Rrf2 family transcriptional regulator 0.25 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 35
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_1470 transcriptional regulator, BadM/Rrf2 family 0.28 Ga0059261_0069 tRNA dimethylallyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS12670 Rrf2 family transcriptional regulator 0.27 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Mycobacterium tuberculosis H37Rv 0.17 Rv1287 Conserved hypothetical protein 0.20 Rv2727c Probable tRNA delta(2)-isopentenylpyrophosphate transferase MiaA (IPP transferase) (isopentenyl-diphosphate:tRNA isopentenyltransferase) (iptase) (IPPT) — —

Not shown: 1 genomes with orthologs for HER17_RS06010 only; 39 genomes with orthologs for HER17_RS02580 only