Conservation of cofitness between HEPCGN_18620 and HEPCGN_08825 in Escherichia coli ECOR38

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_18620 speB agmatinase 1.0 HEPCGN_08825 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.91 5
Escherichia coli ECRC99 1.00 KEDOAH_08825 speB agmatinase 1.00 KEDOAH_17320 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16340 agmatinase 1.00 ECOLIN_RS00285 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Escherichia coli ECRC101 1.00 MCAODC_09835 speB agmatinase 1.00 MCAODC_01350 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 87
Escherichia coli ECRC102 1.00 NIAGMN_17080 speB agmatinase 1.00 NIAGMN_08685 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli ECRC100 1.00 OKFHMN_19315 speB agmatinase 1.00 OKFHMN_10835 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia coli BW25113 1.00 b2937 speB agmatinase (NCBI) 1.00 b0051 ksgA dimethyladenosine transferase (NCBI) low > 76
Escherichia coli ECRC98 1.00 JDDGAC_22945 speB agmatinase 1.00 JDDGAC_14430 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 86
Escherichia coli ECRC62 1.00 BNILDI_09765 speB agmatinase 1.00 BNILDI_08425 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 75
Escherichia coli ECOR27 1.00 NOLOHH_11185 speB agmatinase 1.00 NOLOHH_03180 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA — —
Escherichia fergusonii Becca 1.00 EFB2_00964 Agmatinase 1.00 EFB2_03992 Ribosomal RNA small subunit methyltransferase A low > 86
Escherichia coli BL21 1.00 ECD_02767 agmatinase 1.00 ECD_00055 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00779 Agmatinase 1.00 OHPLBJKB_03605 Ribosomal RNA small subunit methyltransferase A low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.99 GFF3030 Agmatinase (EC 3.5.3.11) 0.96 GFF190 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) low > 78
Enterobacter asburiae PDN3 0.99 EX28DRAFT_2977 agmatinase 0.93 EX28DRAFT_3645 ribosomal RNA small subunit methyltransferase A low > 76
Enterobacter sp. TBS_079 0.99 MPMX20_03798 Agmatinase 0.94 MPMX20_00747 Ribosomal RNA small subunit methyltransferase A low > 85
Klebsiella michiganensis M5al 0.98 BWI76_RS24025 agmatinase 0.95 BWI76_RS04520 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase — —
Serratia liquefaciens MT49 0.89 IAI46_21135 agmatinase 0.81 IAI46_03245 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Erwinia tracheiphila SCR3 0.81 LU632_RS05515 speB agmatinase 0.83 LU632_RS02730 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 74
Pantoea sp. MT58 0.78 IAI47_03665 agmatinase 0.80 IAI47_16085 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 76
Shewanella loihica PV-4 0.64 Shew_1621 agmatinase (RefSeq) 0.63 Shew_0879 ksgA dimethyladenosine transferase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_18230 agmatinase 0.65 CSW01_02325 ribosomal RNA small subunit methyltransferase A — —
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_4717 Agmatinase (EC 3.5.3.11) 0.47 Pf1N1B4_2528 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_2989 Agmatinase (EC 3.5.3.11) 0.47 PfGW456L13_1200 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Pseudomonas putida KT2440 0.49 PP_2196 agmatinase 0.47 PP_0401 Ribosomal RNA small subunit methyltransferase A low > 96
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS26640 agmatinase 0.47 BPHYT_RS03305 ribosomal RNA small subunit methyltransferase A — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS11320 agmatinase 0.47 QEN71_RS02130 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 153
Bosea sp. OAE506 0.39 ABIE41_RS19205 agmatinase 0.28 ABIE41_RS17730 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 77
Dinoroseobacter shibae DFL-12 0.38 Dshi_1735 putative agmatinase (RefSeq) 0.26 Dshi_1185 dimethyladenosine transferase (RefSeq) low > 64
Agrobacterium fabrum C58 0.38 Atu1245 agmatinase 0.27 Atu1103 rRNA-adenine N6,N6-dimethyltransferase low > 89
Rhizobium sp. OAE497 0.37 ABIE40_RS06935 agmatinase 0.25 ABIE40_RS06390 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA 0.30 97
Phaeobacter inhibens DSM 17395 0.36 PGA1_c19930 agmatinase SpeB 0.25 PGA1_c19860 dimethyladenosine transferase KsgA low > 62
Sinorhizobium meliloti 1021 0.36 SMc01802 agmatinase 0.27 SMc00579 dimethyladenosine transferase low > 103
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS08555 agmatinase 0.45 HSERO_RS03540 dimethyladenosine transferase low > 78
Magnetospirillum magneticum AMB-1 0.33 AMB_RS05595 agmatinase 0.30 AMB_RS18820 dimethyladenosine transferase — —
Azospirillum sp. SherDot2 0.33 MPMX19_06753 Guanidinopropionase 0.30 MPMX19_01514 Ribosomal RNA small subunit methyltransferase A — —
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS16040 agmatinase 0.49 ABZR87_RS07710 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_00178 agmatinase 0.48 H281DRAFT_04640 dimethyladenosine transferase low > 103
Pseudomonas sp. S08-1 0.31 OH686_11355 agmatinase 0.47 OH686_15040 ribosomal RNA small subunit methyltransferase A low > 80
Azospirillum brasilense Sp245 0.31 AZOBR_RS30775 agmatinase 0.29 AZOBR_RS16340 16S rRNA methyltransferase low > 97
Variovorax sp. OAS795 0.30 ABID97_RS21560 agmatinase 0.46 ABID97_RS02525 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 91
Pseudomonas fluorescens FW300-N2E2 0.30 Pf6N2E2_2655 Agmatinase (EC 3.5.3.11) 0.47 Pf6N2E2_4805 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) — —
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_04095 agmatinase 0.47 AO356_14335 rRNA methyltransferase low > 104
Pseudomonas sp. RS175 0.30 PFR28_00778 Guanidinobutyrase 0.47 PFR28_04064 Ribosomal RNA small subunit methyltransferase A low > 88
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS02455 agmatinase 0.50 RR42_RS02785 dimethyladenosine transferase low > 128
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_18400 agmatinase 0.47 AO353_07315 rRNA methyltransferase low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF2044 Agmatinase (EC 3.5.3.11) 0.41 GFF2466 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) low > 90
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS22120 agmatinase 0.47 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS22120 agmatinase 0.47 PFLU_RS27465 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 109
Pseudomonas simiae WCS417 0.29 PS417_20180 agmatinase 0.47 PS417_25810 ribosomal RNA small subunit methyltransferase A — —
Ralstonia solanacearum IBSBF1503 0.17 RALBFv3_RS16300 arginase 0.48 RALBFv3_RS11755 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 76
Ralstonia solanacearum UW163 0.17 UW163_RS17040 arginase 0.48 UW163_RS01830 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Ralstonia solanacearum GMI1000 0.17 RS_RS24710 arginase 0.49 RS_RS02580 ribosomal RNA small subunit methyltransferase A low > 80
Ralstonia solanacearum PSI07 0.17 RPSI07_RS07400 arginase 0.49 RPSI07_RS21460 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 81
Castellaniella sp019104865 MT123 0.17 ABCV34_RS07740 agmatinase 0.41 ABCV34_RS09490 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA — —
Desulfovibrio vulgaris Hildenborough JW710 0.16 DVU0421 agmatinase, putative (TIGR) 0.28 DVU1797 ksgA dimethyladenosine transferase (TIGR) low > 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07575 agmatinase 0.23 CA264_03850 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_3131 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 0.24 Echvi_0183 dimethyladenosine transferase 0.37 31
Variovorax sp. SCN45 0.11 GFF3772 Arginase (EC 3.5.3.1) 0.45 GFF3251 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.10 Xcc-8004.4985.1 Arginase (EC 3.5.3.1) 0.43 Xcc-8004.4271.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) low > 74
Rhodanobacter denitrificans MT42 0.10 LRK55_RS05685 arginase 0.39 LRK55_RS12040 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 63
Rhodanobacter denitrificans FW104-10B01 0.10 LRK54_RS05930 arginase 0.39 LRK54_RS12305 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 59
Rhodopseudomonas palustris CGA009 0.10 TX73_024575 arginase 0.27 TX73_015860 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA low > 86
Rhodanobacter sp. FW510-T8 0.10 OKGIIK_00690 rocF arginase 0.38 OKGIIK_11625 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA low > 52

Not shown: 2 genomes with orthologs for HEPCGN_18620 only; 38 genomes with orthologs for HEPCGN_08825 only