Conservation of cofitness between GFF2198 and GFF928 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) 1.0 GFF928 Endoribonuclease L-PSP 0.59 16
Escherichia coli ECRC101 0.95 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia coli ECRC102 0.95 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia coli ECRC101 0.95 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia coli ECRC98 0.95 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia fergusonii Becca 0.95 EFB2_01425 NADP-dependent malic enzyme 0.95 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Escherichia coli ECOR38 0.95 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Escherichia coli Nissle 1917 0.95 ECOLIN_RS14055 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase low > 52
Escherichia coli ECOR27 0.95 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase low > 57
Escherichia coli ECRC62 0.95 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0198 Malic enzyme 0.95 EX28DRAFT_3444 reactive intermediate/imine deaminase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_01268 NADP-dependent malic enzyme 0.95 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase low > 73
Escherichia coli BW25113 0.95 b2463 maeB malic enzyme (NCBI) 0.95 b4243 yjgF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC99 0.95 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia coli BL21 0.95 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase 0.95 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification low > 60
Enterobacter sp. TBS_079 0.94 MPMX20_03324 NADP-dependent malic enzyme 0.94 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Klebsiella michiganensis M5al 0.94 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase 0.95 BWI76_RS02985 reactive intermediate/imine deaminase low > 92
Serratia liquefaciens MT49 0.87 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.86 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Pectobacterium carotovorum WPP14 0.87 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.84 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Rahnella sp. WP5 0.87 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.95 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Dickeya dadantii 3937 0.86 DDA3937_RS04355 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.90 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.90 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.89 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase — —
Dechlorosoma suillum PS 0.63 Dsui_0543 malic enzyme 0.38 Dsui_0312 endoribonuclease L-PSP, putative — —
Paraburkholderia graminis OAS925 0.63 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.27 ABIE53_004706 2-iminobutanoate/2-iminopropanoate deaminase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.25 H281DRAFT_03549 reactive intermediate/imine deaminase low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS18310 malic enzyme 0.24 BPHYT_RS34350 endoribonuclease L-PSP low > 109
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS28455 NADP-dependent malic enzyme 0.46 QEN71_RS41190 RidA family protein — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS03260 NADP-dependent malic enzyme 0.33 RALBFv3_RS20925 endoribonuclease L-PSP low > 76
Ralstonia solanacearum UW163 0.62 UW163_RS10465 NADP-dependent malic enzyme 0.33 UW163_RS22060 endoribonuclease L-PSP — —
Ralstonia solanacearum GMI1000 0.62 RS_RS10650 NADP-dependent malic enzyme 0.28 RS_RS23660 RidA family protein — —
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05210 malic enzyme 0.30 RR42_RS30085 hypothetical protein low > 128
Acinetobacter radioresistens SK82 0.61 MPMX26_01000 NADP-dependent malic enzyme 0.38 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase low > 36
Variovorax sp. OAS795 0.61 ABID97_RS22340 NADP-dependent malic enzyme 0.30 ABID97_RS22895 RidA family protein low > 91
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01565 NADP-dependent malic enzyme 0.22 ABZR87_RS19100 RidA family protein low > 80
Variovorax sp. SCN45 0.60 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) 0.32 GFF6707 RidA/YER057c/UK114 superfamily protein low > 127
Castellaniella sp019104865 MT123 0.60 ABCV34_RS01715 NADP-dependent malic enzyme 0.39 ABCV34_RS03565 Rid family detoxifying hydrolase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) 0.29 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 90
Lysobacter sp. OAE881 0.60 ABIE51_RS18820 NADP-dependent malic enzyme 0.49 ABIE51_RS17260 RidA family protein low > 62
Azospirillum sp. SherDot2 0.59 MPMX19_04254 NADP-dependent malic enzyme 0.29 MPMX19_04018 2-aminomuconate deaminase low > 112
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) 0.46 Xcc-8004.1205.1 hypothetical protein — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_12705 pta NADP-dependent malic enzyme 0.43 OKGIIK_12095 ridA reactive intermediate/imine deaminase low > 52
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS12415 NADP-dependent malic enzyme 0.43 ABZR86_RS11845 RidA family protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS11170 NADP-dependent malic enzyme 0.44 LRK54_RS11800 RidA family protein low > 59
Rhodanobacter denitrificans MT42 0.58 LRK55_RS10875 NADP-dependent malic enzyme 0.44 LRK55_RS11525 RidA family protein — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS21145 NADP-dependent malic enzyme 0.46 AZOBR_RS32435 dfrA low > 97
Rhizobium sp. OAE497 0.55 ABIE40_RS10450 NADP-dependent malic enzyme 0.27 ABIE40_RS21405 RidA family protein low > 107
Sinorhizobium meliloti 1021 0.55 SMc00169 malic enzyme 0.27 SM_b21139 translation initiation inhibitors low > 103
Phaeobacter inhibens DSM 17395 0.54 PGA1_c11910 Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data) 0.21 PGA1_c12800 endoribonuclease-like protein — —
Agrobacterium fabrum C58 0.54 Atu1652 NADP-dependent malic enzyme 0.26 Atu3926 translation initiation inhibitor — —
Bosea sp. OAE506 0.52 ABIE41_RS21715 NADP-dependent malic enzyme 0.22 ABIE41_RS17300 RidA family protein — —
Dinoroseobacter shibae DFL-12 0.52 Dshi_0826 malic protein NAD-binding (RefSeq) 0.26 Dshi_0720 Endoribonuclease L-PSP (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.51 TX73_015740 NADP-dependent malic enzyme 0.21 TX73_004470 RidA family protein low > 86
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS02110 NADP-dependent malic enzyme 0.48 HMPREF1058_RS18400 RidA family protein low > 67
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS07830 NADP-dependent malic enzyme 0.53 HMPREF1181_RS10885 RidA family protein low > 56
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS01295 NADP-dependent malic enzyme 0.48 ABI39_RS14715 RidA family protein low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS19000 NADP-dependent malic enzyme 0.42 CA265_RS22825 reactive intermediate/imine deaminase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_4081 Malic enzyme 0.42 Echvi_1327 endoribonuclease L-PSP, putative low > 79
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) 0.54 BT1336 putative translation initiation inhibitor (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.46 BACOVA_00097 phosphate acetyl/butyryl transferase 0.55 BACOVA_00589 putative endoribonuclease L-PSP low > 94
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS07665 NADP-dependent malic enzyme 0.51 HMPREF1078_RS02020 RidA family protein low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14540 NADP-dependent malic enzyme 0.40 CA264_17590 RidA family protein low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS18305 NADP-dependent malic enzyme 0.44 ABZR88_RS17245 RidA family protein — —
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_3786 Malic enzyme 0.22 Ga0059261_1670 Putative translation initiation inhibitor, yjgF family low > 68

Not shown: 8 genomes with orthologs for GFF2198 only; 29 genomes with orthologs for GFF928 only