Conservation of cofitness between PS417_27040 and PS417_04420 in Pseudomonas simiae WCS417

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27040 3-phosphoglycerate dehydrogenase 1.0 PS417_04420 histidinol dehydrogenase 0.83 12
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 0.99 PFLU_RS04470 histidinol dehydrogenase 0.33 50
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 0.99 PFLU_RS04470 histidinol dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) 0.71 33
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_10300 3-phosphoglycerate dehydrogenase 0.94 AO356_06965 histidinol dehydrogenase 0.82 32
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_08510 3-phosphoglycerate dehydrogenase 0.94 AO353_05110 histidinol dehydrogenase 0.80 24
Pseudomonas sp. RS175 0.96 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.94 PFR28_00187 Histidinol dehydrogenase 0.69 4
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.95 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.92 Psyr_4133 histidinol dehydrogenase 0.90 15
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.92 Psyr_4133 histidinol dehydrogenase 0.80 27
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.95 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.82 27
Pseudomonas putida KT2440 0.91 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.91 PP_0966 Histidinol dehydrogenase 0.78 7
Pseudomonas sp. S08-1 0.90 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.85 OH686_08470 Histidinol dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.86 Psest_3298 histidinol dehydrogenase — —
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.63 ABID97_RS23160 histidinol dehydrogenase — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.63 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) — —
Variovorax sp. SCN45 0.78 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.63 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.62 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) — —
Marinobacter adhaerens HP15 0.75 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.70 HP15_2428 histidinol dehydrogenase — —
Acinetobacter radioresistens SK82 0.68 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.58 MPMX26_02587 Histidinol dehydrogenase 0.86 24
Shewanella amazonensis SB2B 0.68 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.33 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.85 41
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.32 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.89 15
Shewanella oneidensis MR-1 0.67 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.32 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.88 22
Shewanella loihica PV-4 0.67 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.32 Shew_2198 histidinol dehydrogenase (RefSeq) 0.93 39
Alteromonas macleodii MIT1002 0.66 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.32 MIT1002_02633 Histidinol dehydrogenase 0.92 11
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.32 BWI76_RS18925 histidinol dehydrogenase 0.80 34
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.32 EX28DRAFT_0539 histidinol dehydrogenase — —
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.32 IAI46_08210 histidinol dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.32 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.31 ABZR86_RS06730 histidinol dehydrogenase 0.95 6
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.32 LU632_RS08945 hisD histidinol dehydrogenase low > 74
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.33 EX31_RS11440 histidinol dehydrogenase 0.79 44
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.32 MPMX20_03002 Histidinol dehydrogenase 0.90 8
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.27 B158DRAFT_2293 histidinol dehydrogenase low > 40
Escherichia coli ECRC101 0.65 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.33 MCAODC_20425 hisD Histidinol dehydrogenase — —
Escherichia coli ECOR27 0.65 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.33 NOLOHH_15830 hisD Histidinol dehydrogenase low > 57
Escherichia coli ECRC99 0.65 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.33 KEDOAH_03635 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC62 0.65 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.32 BNILDI_14740 hisD Histidinol dehydrogenase — —
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.32 IAI47_07090 histidinol dehydrogenase 0.90 14
Escherichia coli BW25113 0.65 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.33 b2020 hisD histidinol dehydrogenase (NCBI) 0.86 26
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.33 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Escherichia coli ECRC102 0.65 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.33 NIAGMN_22460 hisD Histidinol dehydrogenase — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.33 ECOLIN_RS11945 histidinol dehydrogenase — —
Escherichia fergusonii Becca 0.65 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.33 EFB2_01836 Histidinol dehydrogenase low > 86
Escherichia coli ECOR38 0.65 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.33 HEPCGN_03220 hisD Histidinol dehydrogenase low > 85
Escherichia coli BL21 0.65 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.33 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase low > 60
Escherichia coli ECRC101 0.65 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.33 OKFHMN_24515 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC98 0.65 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.33 JDDGAC_28625 hisD Histidinol dehydrogenase — —
Dickeya dianthicola 67-19 0.65 HGI48_RS18400 phosphoglycerate dehydrogenase 0.33 HGI48_RS09745 histidinol dehydrogenase low > 71
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03185 phosphoglycerate dehydrogenase 0.31 LRK54_RS01605 histidinol dehydrogenase 0.75 18
Dickeya dianthicola ME23 0.65 DZA65_RS19540 phosphoglycerate dehydrogenase 0.33 DZA65_RS10055 histidinol dehydrogenase low > 75
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02935 phosphoglycerate dehydrogenase 0.31 LRK55_RS01385 histidinol dehydrogenase low > 63
Dickeya dadantii 3937 0.65 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.33 DDA3937_RS09735 histidinol dehydrogenase 0.80 34
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.31 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12555 phosphoglycerate dehydrogenase 0.34 CSW01_05750 histidinol dehydrogenase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.34 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.80 24
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.33 HER17_RS12230 histidinol dehydrogenase 0.86 37
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.32 ABIE51_RS13325 histidinol dehydrogenase 0.92 6
Azospirillum sp. SherDot2 0.59 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.45 MPMX19_05543 Histidinol dehydrogenase — —
Rhizobium sp. OAE497 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.46 ABIE40_RS02725 histidinol dehydrogenase low > 107
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.47 Rru_A2771 Histidinol dehydrogenase (NCBI) — —
Bosea sp. OAE506 0.54 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.46 ABIE41_RS24015 histidinol dehydrogenase low > 77
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.57 ABCV34_RS11230 histidinol dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.65 RR42_RS18915 histidinol dehydrogenase — —
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.32 BBR_RS17055 histidinol dehydrogenase low > 34

Not shown: 1 genomes with orthologs for PS417_27040 only; 37 genomes with orthologs for PS417_04420 only