| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 1.0 | HP15_724 | | periplasmic sensor signal transduction histidine kinase | 0.51 | 2 |
| Pseudomonas putida KT2440 | 0.63 | PP_0952 | | RNA polymerase sigma-54 factor | 0.22 | PP_0264 | | Sensor histidine kinase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.63 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.24 | AO356_10060 | | ATPase | — | — |
| Pseudomonas sp. RS175 | 0.62 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.24 | PFR28_04890 | | C4-dicarboxylate transport sensor protein DctB | — | — |
| Pseudomonas sp. S08-1 | 0.62 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.22 | OH686_14360 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.24 | PFLU_RS01405 | | sensor histidine kinase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.23 | AO353_11865 | | ATPase | — | — |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.24 | PFLU_RS01405 | | sensor histidine kinase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.23 | PfGW456L13_400 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.24 | Pf6N2E2_3882 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.61 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.22 | Psyr_4937 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.61 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.22 | Psyr_4937 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | — | — |
| Pseudomonas stutzeri RCH2 | 0.61 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.23 | Psest_4131 | | alpha-ketoglutarate sensor protein (mifS) (from data) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.61 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.24 | Pf1N1B4_1665 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | — | — |
| Pseudomonas simiae WCS417 | 0.61 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.24 | PS417_01310 | | ATPase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.25 | CSW01_09630 | | sensor histidine kinase | low | > 62 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | 0.19 | ECOLIN_RS23465 | | ATP-binding protein | — | — |
| Escherichia fergusonii Becca | 0.55 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.19 | EFB2_04537 | | C4-dicarboxylate transport sensor protein DctB | — | — |
| Shewanella amazonensis SB2B | 0.54 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.23 | Sama_2212 | | putative two-component sensor histidine kinase protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.24 | Shewana3_1413 | | ATPase domain-containing protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.54 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.21 | SO3136.1 | | hypothetical two-component sensor histidine kinase protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.54 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.24 | Shew_1443 | | integral membrane sensor signal transduction histidine kinase (RefSeq) | low | > 60 |
| Dechlorosoma suillum PS | 0.43 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.25 | Dsui_3485 | | signal transduction histidine kinase regulating C4-dicarboxylate transport system | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | 0.25 | ABZR87_RS06630 | | sensor histidine kinase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | 0.26 | RR42_RS01700 | | ATPase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.23 | H281DRAFT_02038 | | two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB | 0.31 | 33 |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.24 | RS_RS01630 | | sensor histidine kinase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_000718 | | RNA polymerase sigma-54 factor | 0.24 | ABIE53_001851 | | two-component system C4-dicarboxylate transport sensor histidine kinase DctB | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.25 | RPSI07_RS22525 | | sensor histidine kinase | 0.60 | 27 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.25 | BPHYT_RS02515 | | ATPase | low | > 109 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.25 | UW163_RS02790 | | sensor histidine kinase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | 0.22 | HSERO_RS16815 | | C4-dicarboxylate ABC transporter | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.25 | RALBFv3_RS10790 | | sensor histidine kinase | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.26 | QEN71_RS01370 | | ATP-binding protein | 0.80 | 3 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | 0.16 | ABID97_RS26600 | | ATP-binding protein | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | 0.15 | GFF1692 | | Two-component system sensor histidine kinase | low | > 127 |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.21 | Rru_A1436 | | Histidine Kinase (NCBI) | 0.67 | 3 |
| Agrobacterium fabrum C58 | 0.32 | Atu0332 | | RNA polymerase sigma-54 factor | 0.23 | Atu0113 | | two component sensor kinase | low | > 89 |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | 0.18 | ABIE40_RS26340 | | ATP-binding protein | 0.63 | 3 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.22 | AZOBR_RS21135 | | histidine kinase | low | > 97 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc01139 | | RNA polymerase factor sigma-54 | 0.22 | SM_b21201 | | two-component sensor histidine kinase | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS19925 | | RNA polymerase sigma-54 factor | 0.21 | AMB_RS08385 | | sensor histidine kinase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.19 | Ga0059261_0618 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system | low | > 68 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.22 | MPMX19_04252 | | C4-dicarboxylate transport sensor protein DctB | low | > 112 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS16075 | | RNA polymerase factor sigma-54 | 0.17 | A4249_RS04420 | | ATP-binding protein | low | > 48 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | 0.12 | ABCV34_RS02720 | | ATP-binding protein | low | > 48 |
Not shown: 50 genomes with orthologs for HP15_2442 only; 2 genomes with orthologs for HP15_724 only