Conservation of cofitness between GFF1973 and GFF5731 in Hydrogenophaga sp. GW460-11-11-14-LB1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 1.0 GFF5731 3'-to-5' oligoribonuclease (orn) 0.75 12
Acidovorax sp. GW101-3H11 0.72 Ac3H11_4848 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.75 Ac3H11_1677 3'-to-5' oligoribonuclease (orn) low > 79
Marinobacter adhaerens HP15 0.46 HP15_2610 D-amino acid dehydrogenase small subunit 0.53 HP15_2506 oligoribonuclease — —
Variovorax sp. SCN45 0.45 GFF6883 D-amino acid dehydrogenase (EC 1.4.99.6) 0.78 GFF3960 3'-to-5' oligoribonuclease (orn) low > 127
Variovorax sp. OAS795 0.45 ABID97_RS05655 D-amino acid dehydrogenase 0.77 ABID97_RS08790 oligoribonuclease low > 91
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS07275 D-amino acid dehydrogenase 0.62 HSERO_RS07210 oligoribonuclease — —
Dechlorosoma suillum PS 0.43 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.57 Dsui_3222 oligoribonuclease (3'->5' exoribonuclease) — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS06160 D-amino acid dehydrogenase 0.65 ABCV34_RS06995 oligoribonuclease — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS09560 D-amino acid dehydrogenase 0.62 ABZR87_RS09645 oligoribonuclease — —
Ralstonia solanacearum UW163 0.36 UW163_RS15940 D-amino acid dehydrogenase small subunit 0.64 UW163_RS15860 oligoribonuclease — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit 0.64 RALBFv3_RS13950 oligoribonuclease — —
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.45 OKGIIK_07465 orn oligoribonuclease — —
Dickeya dadantii 3937 0.36 DDA3937_RS11170 D-amino acid dehydrogenase 0.54 DDA3937_RS18940 oligoribonuclease — —
Rhodanobacter denitrificans MT42 0.36 LRK55_RS00360 D-amino acid dehydrogenase 0.44 LRK55_RS17690 oligoribonuclease — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS19600 D-amino acid dehydrogenase small subunit 0.64 RPSI07_RS19520 oligoribonuclease — —
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS00590 D-amino acid dehydrogenase 0.44 LRK54_RS17470 oligoribonuclease — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS11170 D-amino acid dehydrogenase 0.55 HER17_RS02415 oligoribonuclease — —
Dickeya dianthicola 67-19 0.36 HGI48_RS11195 D-amino acid dehydrogenase 0.54 HGI48_RS19035 oligoribonuclease — —
Ralstonia solanacearum GMI1000 0.36 RS_RS04605 D-amino acid dehydrogenase small subunit 0.64 RS_RS04685 oligoribonuclease — —
Dickeya dianthicola ME23 0.36 DZA65_RS11540 D-amino acid dehydrogenase 0.54 DZA65_RS20150 oligoribonuclease — —
Escherichia coli ECRC98 0.35 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.56 JDDGAC_15950 orn oligoribonuclease — —
Escherichia coli BW25113 0.35 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.56 b4162 yjeR orf, hypothetical protein (VIMSS) — —
Escherichia coli ECRC101 0.35 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.56 OKFHMN_12315 orn oligoribonuclease — —
Escherichia coli ECRC62 0.35 BNILDI_18890 dadA D-amino acid dehydrogenase 0.56 BNILDI_06915 orn oligoribonuclease — —
Escherichia coli Nissle 1917 0.35 ECOLIN_RS07185 D-amino acid dehydrogenase 0.56 ECOLIN_RS24180 oligoribonuclease — —
Escherichia coli BL21 0.35 ECD_01164 D-amino acid dehydrogenase 0.56 ECD_04032 oligoribonuclease — —
Escherichia fergusonii Becca 0.35 EFB2_02743 D-amino acid dehydrogenase 0.56 EFB2_04373 Oligoribonuclease — —
Escherichia coli ECRC102 0.35 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.56 NIAGMN_10160 orn oligoribonuclease — —
Escherichia coli ECOR38 0.35 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.56 HEPCGN_10540 orn oligoribonuclease — —
Escherichia coli ECRC99 0.35 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.56 KEDOAH_15850 orn oligoribonuclease — —
Escherichia coli ECOR27 0.35 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.56 NOLOHH_04575 orn oligoribonuclease — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02500 D-amino acid dehydrogenase 0.56 OHPLBJKB_03880 Oligoribonuclease — —
Escherichia coli ECRC101 0.35 MCAODC_21880 dadA D-amino acid dehydrogenase 0.56 MCAODC_02825 orn oligoribonuclease — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.55 EX28DRAFT_3360 Oligoribonuclease (3'->5' exoribonuclease) — —
Acinetobacter radioresistens SK82 0.35 MPMX26_01248 D-amino acid dehydrogenase 0.50 MPMX26_02630 Oligoribonuclease — —
Pantoea sp. MT58 0.35 IAI47_08890 D-amino acid dehydrogenase 0.55 IAI47_02540 oligoribonuclease — —
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.51 PfGW456L13_162 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas simiae WCS417 0.35 PS417_27705 amino acid dehydrogenase 0.53 PS417_02450 oligoribonuclease — —
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_04065 D-amino acid dehydrogenase small subunit 0.51 CSW01_01765 oligoribonuclease — —
Enterobacter sp. TBS_079 0.35 MPMX20_02699 D-amino acid dehydrogenase 0.56 MPMX20_00443 Oligoribonuclease — —
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.50 Pf1N1B4_1420 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas putida KT2440 0.35 PP_4434 D-amino acid dehydrogenase 1 small subunit 0.53 PP_4902 Oligoribonuclease low > 96
Pseudomonas sp. RS175 0.34 PFR28_04399 D-amino acid dehydrogenase 1 0.52 PFR28_05113 Oligoribonuclease — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29380 D-amino acid dehydrogenase 0.53 PFLU_RS02530 oligoribonuclease — —
Serratia liquefaciens MT49 0.34 IAI46_14460 D-amino acid dehydrogenase 0.55 IAI46_01575 oligoribonuclease — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_12620 amino acid dehydrogenase 0.53 AO356_08695 oligoribonuclease — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29380 D-amino acid dehydrogenase 0.53 PFLU_RS02530 oligoribonuclease — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.52 Pf6N2E2_3622 3'-to-5' oligoribonuclease (orn) — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09155 amino acid dehydrogenase 0.52 AO353_13105 oligoribonuclease — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0235 D-amino acid dehydrogenase small subunit 0.51 Psyr_0564 Exonuclease — —
Klebsiella michiganensis M5al 0.34 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.56 BWI76_RS02480 oligoribonuclease — —
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.47 Xcc-8004.2410.1 3'-to-5' oligoribonuclease (orn) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.55 GFF1989 '3'-to-5' oligoribonuclease (orn)' transl_table=11 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0235 D-amino acid dehydrogenase small subunit 0.51 Psyr_0564 Exonuclease — —
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS04585 amino acid dehydrogenase 0.63 RR42_RS14770 oligoribonuclease — —
Pseudomonas sp. S08-1 0.34 OH686_13685 D-amino acid dehydrogenase 0.53 OH686_09505 3'-to-5' oligoribonuclease (orn) low > 80
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04287 D-amino-acid dehydrogenase 0.61 H281DRAFT_04301 oligoribonuclease — —
Paraburkholderia graminis OAS925 0.33 ABIE53_003133 D-amino-acid dehydrogenase 0.62 ABIE53_003119 oligoribonuclease — —
Pseudomonas stutzeri RCH2 0.33 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.54 Psest_0500 Oligoribonuclease (3'->5' exoribonuclease) — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS04190 D-amino acid dehydrogenase 0.63 QEN71_RS04255 oligoribonuclease — —
Rahnella sp. WP5 0.33 EX31_RS10485 D-amino acid dehydrogenase 0.55 EX31_RS08865 oligoribonuclease — —
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS17845 amino acid dehydrogenase 0.61 BPHYT_RS14720 oligoribonuclease — —
Erwinia tracheiphila SCR3 0.32 LU632_RS13070 D-amino acid dehydrogenase 0.54 LU632_RS01950 orn oligoribonuclease — —

Not shown: 7 genomes with orthologs for GFF1973 only; 9 genomes with orthologs for GFF5731 only