Conservation of cofitness between PS417_23250 and PS417_25835 in Pseudomonas simiae WCS417

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 1.0 PS417_25835 hypothetical protein 0.42 7
Pseudomonas fluorescens SBW25 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.95 Pf1N1B4_2522 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.95 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.96 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.95 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas sp. RS175 0.91 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.95 PFR28_04069 hypothetical protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.92 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.92 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas putida KT2440 0.89 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.89 PP_0396 conserved protein of unknown function 0.28 69
Pseudomonas sp. S08-1 0.85 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.90 OH686_15015 UPF0229 protein YeaH low > 80
Pseudomonas stutzeri RCH2 0.85 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.87 Psest_3673 Uncharacterized conserved protein low > 67
Shewanella oneidensis MR-1 0.73 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.56 SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.39 5
Shewanella sp. ANA-3 0.73 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.53 Shewana3_1637 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.73 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.56 Shew_1832 hypothetical protein (RefSeq) — —
Rahnella sp. WP5 0.72 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 EX31_RS06255 YeaH/YhbH family protein low > 89
Shewanella amazonensis SB2B 0.72 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.54 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Serratia liquefaciens MT49 0.72 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 CSW01_09385 hypothetical protein low > 62
Pantoea sp. MT58 0.71 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.57 IAI47_08920 YeaH/YhbH family protein low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 LU632_RS13015 YeaH/YhbH family protein low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Dickeya dianthicola 67-19 0.71 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 HGI48_RS10250 YeaH/YhbH family protein low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 DZA65_RS10725 YeaH/YhbH family protein low > 75
Dickeya dadantii 3937 0.71 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 DDA3937_RS10240 YeaH/YhbH family protein 0.41 28
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 BWI76_RS11480 hypothetical protein low > 92
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 ECD_01753 UPF0229 family protein — —
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR38 0.70 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 EFB2_02210 hypothetical protein low > 86
Enterobacter sp. TBS_079 0.70 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 MPMX20_01839 hypothetical protein low > 85
Pectobacterium carotovorum WPP14 0.70 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.58 HER17_RS11155 YeaH/YhbH family protein low > 75
Escherichia coli Nissle 1917 0.70 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 ECOLIN_RS09945 YeaH/YhbH family protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.56 GFF3472 UPF0229 protein YeaH low > 78
Marinobacter adhaerens HP15 0.65 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.64 HP15_2934 protein YeaH low > 73
Alteromonas macleodii MIT1002 0.64 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.60 MIT1002_01232 hypothetical protein low > 70
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.54 HSERO_RS21695 hypothetical protein low > 78
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.52 RR42_RS36480 hypothetical protein low > 128
Variovorax sp. OAS795 0.52 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.46 ABID97_RS10265 YeaH/YhbH family protein low > 91
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.48 GFF2934 FIG002076: hypothetical protein low > 127
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.49 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.53 BPHYT_RS11185 hypothetical protein low > 109
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.53 QEN71_RS07380 YeaH/YhbH family protein low > 153
Paraburkholderia graminis OAS925 0.49 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.55 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.55 H281DRAFT_05233 hypothetical protein low > 103
Azospirillum sp. SherDot2 0.44 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.44 MPMX19_02156 hypothetical protein low > 112
Azospirillum brasilense Sp245 0.43 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.39 AZOBR_RS12650 hypothetical protein low > 97
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.39 ABIE40_RS12545 YeaH/YhbH family protein low > 107
Phaeobacter inhibens DSM 17395 0.39 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.42 PGA1_c02480 Uncharacterized conserved protein low > 62
Magnetospirillum magneticum AMB-1 0.39 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.44 AMB_RS10890 hypothetical protein low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 CA264_07095 hypothetical protein — —
Sinorhizobium meliloti 1021 0.38 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.40 SMc01266 hypothetical protein low > 103

Not shown: 37 genomes with orthologs for PS417_23250 only; 0 genomes with orthologs for PS417_25835 only