Conservation of cofitness between PS417_01600 and PS417_24705 in Pseudomonas simiae WCS417

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_01600 peptidase M23 1.0 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.43 10
Pseudomonas fluorescens SBW25 0.99 PFLU_RS01650 murein hydrolase activator EnvC 1.00 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS01650 murein hydrolase activator EnvC 1.00 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_12110 peptidase M23 0.91 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.49 11
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_1618 Lipoprotein NlpD 0.91 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3834 Lipoprotein NlpD 0.90 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.36 39
Pseudomonas sp. RS175 0.88 PFR28_04937 Murein hydrolase activator EnvC 0.90 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.35 21
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_09775 peptidase M23 0.90 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.55 9
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.91 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_4886 Peptidase M23B 0.90 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.54 3
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_4886 Peptidase M23B 0.90 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.47 21
Pseudomonas putida KT2440 0.72 PP_5057 Peptidase, M23/M37 family 0.91 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.29 6
Pseudomonas sp. S08-1 0.69 OH686_14650 Murein hydrolase activator EnvC 0.75 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas stutzeri RCH2 0.67 Psest_0161 Membrane-bound metallopeptidase 0.79 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.31 4
Marinobacter adhaerens HP15 0.28 HP15_3006 peptidase M23B 0.53 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0705 Membrane-bound metallopeptidase 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Shewanella sp. ANA-3 0.26 Shewana3_0050 peptidase M23B (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.60 20
Shewanella loihica PV-4 0.26 Shew_3807 peptidase M23B (RefSeq) 0.45 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.67 4
Shewanella oneidensis MR-1 0.25 SO0048 peptidase, M23/M37 family (NCBI ptt file) 0.44 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Lysobacter sp. OAE881 0.25 ABIE51_RS19260 peptidoglycan DD-metalloendopeptidase family protein 0.48 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Shewanella amazonensis SB2B 0.25 Sama_0059 M24/M37 family peptidase (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS00825 protease 0.41 HSERO_RS21530 cytochrome C550 0.34 19
Dechlorosoma suillum PS 0.24 Dsui_1271 membrane-bound metallopeptidase 0.48 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Alteromonas macleodii MIT1002 0.23 MIT1002_00489 Septal ring factor 0.44 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Enterobacter asburiae PDN3 0.22 EX28DRAFT_3864 Membrane-bound metallopeptidase 0.42 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Enterobacter sp. TBS_079 0.22 MPMX20_00120 Murein hydrolase activator EnvC 0.42 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Escherichia fergusonii Becca 0.22 EFB2_00197 Murein hydrolase activator EnvC 0.43 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Pectobacterium carotovorum WPP14 0.22 HER17_RS20750 murein hydrolase activator EnvC 0.45 HER17_RS12545 serine hydrolase low > 75
Escherichia coli ECOR38 0.22 HEPCGN_14570 envC murein hydrolase activator EnvC 0.42 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 85
Escherichia coli ECRC99 0.21 KEDOAH_12420 envC murein hydrolase activator EnvC 0.42 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR27 0.21 NOLOHH_07610 envC murein hydrolase activator EnvC 0.42 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_00086 Murein hydrolase activator EnvC 0.43 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECRC98 0.21 JDDGAC_19355 envC murein hydrolase activator EnvC 0.42 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC102 0.21 NIAGMN_13490 envC murein hydrolase activator EnvC 0.42 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.21 MCAODC_06240 envC murein hydrolase activator EnvC 0.42 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC62 0.21 BNILDI_03905 envC murein hydrolase activator EnvC 0.42 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Dickeya dadantii 3937 0.21 DDA3937_RS20420 murein hydrolase activator EnvC 0.43 DDA3937_RS09420 serine hydrolase low > 74
Escherichia coli ECRC101 0.21 OKFHMN_15730 envC murein hydrolase activator EnvC 0.42 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli Nissle 1917 0.21 ECOLIN_RS20620 murein hydrolase activator EnvC 0.42 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.21 b3613 yibP putative membrane protein (VIMSS) 0.43 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli BL21 0.21 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor 0.43 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.41 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.29.1 Cell wall endopeptidase, family M23/M37 0.44 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.54 10
Klebsiella michiganensis M5al 0.21 BWI76_RS27235 murein hydrolase activator EnvC 0.44 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Dickeya dianthicola ME23 0.21 DZA65_RS00835 murein hydrolase activator EnvC 0.43 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Rahnella sp. WP5 0.21 EX31_RS14365 murein hydrolase activator EnvC 0.43 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Castellaniella sp019104865 MT123 0.21 ABCV34_RS14275 peptidoglycan DD-metalloendopeptidase family protein 0.41 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.43 21
Erwinia tracheiphila SCR3 0.21 LU632_RS21895 envC murein hydrolase activator EnvC 0.43 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.81 51
Dickeya dianthicola 67-19 0.21 HGI48_RS00780 murein hydrolase activator EnvC 0.43 HGI48_RS09435 serine hydrolase low > 71
Pantoea sp. MT58 0.20 IAI47_00720 murein hydrolase activator EnvC 0.43 IAI47_13090 serine hydrolase low > 76
Vibrio cholerae E7946 ATCC 55056 0.20 CSW01_01735 peptidase M23 0.46 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Serratia liquefaciens MT49 0.20 IAI46_24715 murein hydrolase activator EnvC 0.43 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.88 2
Rhodanobacter denitrificans MT42 0.17 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein 0.48 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.17 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein 0.48 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS13355 peptidoglycan DD-metalloendopeptidase family protein 0.45 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_12915 Peptidase M23 0.46 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Rhodopseudomonas palustris CGA009 0.11 TX73_000875 peptidoglycan DD-metalloendopeptidase family protein 0.31 TX73_014370 D-alanyl-D-alanine carboxypeptidase — —
Rhodospirillum rubrum S1H 0.11 Rru_A1233 Peptidase M23B (NCBI) 0.36 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Agrobacterium fabrum C58 0.10 Atu2775 hypothetical protein 0.25 Atu1499 penicillin binding protein — —
Azospirillum sp. SherDot2 0.10 MPMX19_01938 hypothetical protein 0.37 MPMX19_05873 D-alanyl-D-alanine carboxypeptidase DacA low > 112
Rhizobium sp. OAE497 0.09 ABIE40_RS18970 murein hydrolase activator EnvC 0.24 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107

Not shown: 5 genomes with orthologs for PS417_01600 only; 22 genomes with orthologs for PS417_24705 only