| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_20575 | | ATP-dependent helicase HrpA | 1.0 | PS417_24600 | | hydrogenase | 0.29 | 11 |
| Pseudomonas fluorescens SBW25-INTG | 0.98 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | 0.98 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.98 | PFLU_RS22265 | | ATP-dependent RNA helicase HrpA | 0.98 | PFLU_RS26530 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.92 | AO353_18225 | | ATP-dependent RNA helicase HrpA | 0.90 | AO353_06350 | | hydrogenase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_4467 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.89 | PfGW456L13_1385 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.92 | Pf6N2E2_2694 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.79 | Pf6N2E2_5024 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_3388 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.80 | Pf1N1B4_2718 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_04280 | | ATP-dependent RNA helicase HrpA | 0.89 | AO356_15435 | | hydrogenase | low | > 104 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_00739 | | hypothetical protein | 0.86 | PFR28_03843 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.90 | Psyr_3831 | | ATP-dependent helicase HrpA | 0.84 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.90 | Psyr_3831 | | ATP-dependent helicase HrpA | 0.84 | Psyr_4340 | | phosphomethylpyrimidine kinase, putative | low | > 86 |
| Pseudomonas putida KT2440 | 0.83 | PP_4546 | | ATP-dependent helicase HrpA | 0.83 | PP_4782 | | Phosphomethylpyrimidine kinase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.80 | OH686_05730 | | RNA helicase HrpA | 0.81 | OH686_09185 | | Hydroxymethylpyrimidine phosphate kinase ThiD | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_1339 | | ATP-dependent helicase HrpA | 0.77 | Psest_0537 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 67 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_1863 | | RNA helicase, ATP-dependent DEAH box, HrpA type | 0.26 | HP15_349 | | phosphomethylpyrimidine kinase | — | — |
| Serratia liquefaciens MT49 | 0.47 | IAI46_13330 | | ATP-dependent RNA helicase HrpA | 0.23 | IAI46_19100 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 86 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS12270 | | ATP-dependent RNA helicase HrpA | 0.21 | DDA3937_RS15335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 74 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS12800 | | ATP-dependent RNA helicase HrpA | 0.20 | DZA65_RS16235 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_06950 | | ATP-dependent RNA helicase HrpA | 0.23 | CSW01_06545 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 62 |
| Dickeya dianthicola 67-19 | 0.46 | HGI48_RS12360 | | ATP-dependent RNA helicase HrpA | 0.21 | HGI48_RS15410 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 71 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF2632 | | ATP-dependent RNA helicase HrpA (EC 3.6.4.13) | 0.23 | GFF3834 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | 0.59 | 23 |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS09660 | | ATP-dependent RNA helicase HrpA | 0.25 | HER17_RS06265 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 75 |
| Pantoea sp. MT58 | 0.46 | IAI47_09520 | | ATP-dependent RNA helicase HrpA | 0.21 | IAI47_06810 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS08180 | | ATP-dependent RNA helicase HrpA | 0.24 | ECOLIN_RS12335 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Rahnella sp. WP5 | 0.46 | EX31_RS06495 | | ATP-dependent RNA helicase HrpA | 0.23 | EX31_RS20390 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 89 |
| Escherichia fergusonii Becca | 0.46 | EFB2_02565 | | hypothetical protein | 0.24 | EFB2_01754 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 86 |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_25865 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | NIAGMN_22020 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC101 | 0.46 | MCAODC_16205 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | MCAODC_21085 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_1357 | | RNA helicase HrpA | 0.23 | EX28DRAFT_0469 | | hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 76 |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_04220 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | JDDGAC_28185 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_26710 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | KEDOAH_04075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC101 | 0.46 | OKFHMN_01730 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | OKFHMN_24075 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS13165 | | ATP-dependent RNA helicase HrpA | 0.23 | BWI76_RS19375 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 92 |
| Escherichia coli BL21 | 0.46 | ECD_01368 | | putative ATP-dependent helicase | 0.24 | ECD_02031 | | hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_02301 | | hypothetical protein | 0.24 | OHPLBJKB_01607 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 73 |
| Escherichia coli BW25113 | 0.46 | b1413 | hrpA | ATP-dependent helicase (RefSeq) | 0.24 | b2103 | thiD | phosphomethylpyrimidine kinase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_19390 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | NOLOHH_15415 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Escherichia coli ECRC62 | 0.46 | BNILDI_17845 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | BNILDI_14330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_02189 | | hypothetical protein | 0.23 | MPMX20_03076 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | low | > 85 |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_26110 | hrpA | ATP-dependent RNA helicase HrpA | 0.24 | HEPCGN_02760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.44 | LU632_RS12630 | hrpA | ATP-dependent RNA helicase HrpA | 0.22 | LU632_RS08590 | thiD | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS13030 | | ATP-dependent helicase | 0.19 | RR42_RS01370 | | phosphomethylpyrimidine kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS11020 | | ATP-dependent RNA helicase HrpA | 0.24 | ABZR87_RS04830 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS06270 | | ATP-dependent RNA helicase HrpA | 0.25 | RS_RS00495 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS12950 | | ATP-dependent RNA helicase HrpA | 0.25 | UW163_RS03675 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Dechlorosoma suillum PS | 0.41 | Dsui_1373 | | ATP-dependent helicase HrpA | 0.38 | Dsui_0662 | | phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS15490 | | ATP-dependent RNA helicase HrpA | 0.25 | RALBFv3_RS09905 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS17865 | | ATP-dependent RNA helicase HrpA | 0.25 | RPSI07_RS23455 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS16615 | | ATP-dependent RNA helicase HrpA | 0.19 | ABID97_RS15330 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS12980 | | ATP-dependent helicase | 0.20 | BPHYT_RS12250 | | phosphomethylpyrimidine kinase | — | — |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS02420 | | ATP-dependent RNA helicase HrpA | 0.20 | ABCV34_RS14505 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS17315 | | ATP-dependent helicase | 0.29 | HSERO_RS02135 | | phosphomethylpyrimidine kinase | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_002813 | | ATP-dependent helicase HrpA | 0.20 | ABIE53_002529 | | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | — | — |
| Variovorax sp. SCN45 | 0.38 | GFF247 | | ATP-dependent helicase HrpA | 0.16 | GFF2149 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_896 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | 0.19 | Ac3H11_1063 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF4301 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | 0.23 | GFF249 | | Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) | low | > 90 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS19720 | | ATP-dependent RNA helicase HrpA | 0.22 | ABZR86_RS00760 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS05155 | | ATP-dependent RNA helicase HrpA | 0.20 | ABIE51_RS07970 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_02008 | | hypothetical protein | 0.36 | MPMX26_02438 | | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS05625 | | ATP-dependent RNA helicase HrpA | 0.20 | QEN71_RS06305 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_00445 | | ATP-dependent helicase HrpA | 0.22 | H281DRAFT_00587 | | hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_02155 | hrpA | ATP-dependent RNA helicase HrpA | 0.20 | OKGIIK_03835 | | Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 52 |
| Bifidobacterium breve UCC2003 | 0.32 | BBR_RS17010 | | DUF3418 domain-containing protein | 0.24 | BBR_RS17215 | | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | low | > 34 |
Not shown: 6 genomes with orthologs for PS417_20575 only; 31 genomes with orthologs for PS417_24600 only