Conservation of cofitness between GFF4229 and GFF4665 in Hydrogenophaga sp. GW460-11-11-14-LB1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4229 Exopolyphosphatase (EC 3.6.1.11) 1.0 GFF4665 Putative deoxyribonuclease YcfH 0.67 15
Acidovorax sp. GW101-3H11 0.62 Ac3H11_455 Exopolyphosphatase (EC 3.6.1.11) 0.71 Ac3H11_2488 Putative deoxyribonuclease YcfH low > 79
Variovorax sp. SCN45 0.60 GFF1091 Exopolyphosphatase (EC 3.6.1.11) 0.70 GFF34 Uncharacterized metal-dependent hydrolase YcfH low > 127
Variovorax sp. OAS795 0.59 ABID97_RS14590 Ppx/GppA phosphatase family protein 0.71 ABID97_RS16000 TatD family hydrolase low > 91
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS04855 exopolyphosphatase 0.53 QEN71_RS21805 TatD family hydrolase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04419 Ppx/GppA phosphatase 0.53 H281DRAFT_00931 TatD DNase family protein low > 103
Dechlorosoma suillum PS 0.34 Dsui_2813 exopolyphosphatase 0.53 Dsui_2652 hydrolase, TatD family low > 51
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS14105 exopolyphosphatase 0.53 BPHYT_RS09640 DNAase 0.72 13
Ralstonia solanacearum PSI07 0.33 RPSI07_RS15335 exopolyphosphatase 0.59 RPSI07_RS16465 TatD family deoxyribonuclease low > 81
Ralstonia solanacearum GMI1000 0.33 RS_RS07710 exopolyphosphatase 0.60 RS_RS09020 TatD family deoxyribonuclease low > 80
Ralstonia solanacearum UW163 0.33 UW163_RS15420 exopolyphosphatase 0.60 UW163_RS14320 TatD family deoxyribonuclease
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS02110 exopolyphosphatase 0.60 RALBFv3_RS01010 TatD family deoxyribonuclease low > 76
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS13430 exopolyphosphatase 0.62 RR42_RS10885 DNAase low > 128
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS14060 exopolyphosphatase 0.61 ABZR87_RS12460 TatD family hydrolase low > 80
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0294 Exopolyphosphatase 0.38 Psyr_1655 TatD-related deoxyribonuclease low > 86
Pseudomonas putida KT2440 0.32 PP_5216 exopolyphosphatase 0.41 PP_1967 tRNA D-aminoacylase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0294 Exopolyphosphatase 0.38 Psyr_1655 TatD-related deoxyribonuclease low > 86
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_875 Exopolyphosphatase (EC 3.6.1.11) 0.41 PfGW456L13_2112 Putative deoxyribonuclease YcfH low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12900 exopolyphosphatase 0.40 AO356_20205 hydrolase TatD low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4454 Exopolyphosphatase (EC 3.6.1.11) 0.40 Pf6N2E2_5960 Putative deoxyribonuclease YcfH low > 103
Pseudomonas simiae WCS417 0.32 PS417_27425 exopolyphosphatase 0.39 PS417_21405 hydrolase TatD low > 88
Pseudomonas sp. RS175 0.32 PFR28_04344 Exopolyphosphatase 0.40 PFR28_03002 putative metal-dependent hydrolase YcfH low > 88
Pseudomonas fluorescens SBW25 0.32 PFLU_RS29090 exopolyphosphatase 0.40 PFLU_RS23020 TatD family hydrolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS29090 exopolyphosphatase 0.40 PFLU_RS23020 TatD family hydrolase low > 109
Pseudomonas stutzeri RCH2 0.32 Psest_3731 exopolyphosphatase 0.39 Psest_1696 hydrolase, TatD family low > 67
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS09440 exopolyphosphatase 0.55 HSERO_RS12995 DNAase low > 78
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_08880 exopolyphosphatase 0.41 AO353_01325 hydrolase TatD low > 101
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_2209 Exopolyphosphatase (EC 3.6.1.11) 0.39 Pf1N1B4_420 Putative deoxyribonuclease YcfH low > 87
Pseudomonas sp. S08-1 0.31 OH686_11275 Exopolyphosphatase 0.39 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH low > 80
Castellaniella sp019104865 MT123 0.30 ABCV34_RS15575 Ppx/GppA phosphatase family protein 0.54 ABCV34_RS03960 TatD family hydrolase low > 48
Enterobacter sp. TBS_079 0.30 MPMX20_03357 Exopolyphosphatase 0.38 MPMX20_01780 putative metal-dependent hydrolase YcfH low > 85
Enterobacter asburiae PDN3 0.30 EX28DRAFT_0165 exopolyphosphatase 0.38 EX28DRAFT_1829 hydrolase, TatD family low > 76
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03775 exopolyphosphatase 0.42 CSW01_10060 YchF/TatD family DNA exonuclease low > 62
Klebsiella michiganensis M5al 0.29 BWI76_RS21000 exopolyphosphatase 0.37 BWI76_RS11125 metal-dependent hydrolase low > 92
Erwinia tracheiphila SCR3 0.29 LU632_RS24270 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 LU632_RS14785 metal-dependent hydrolase low > 74
Pantoea sp. MT58 0.29 IAI47_18540 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.39 IAI47_12035 metal-dependent hydrolase low > 76
Acinetobacter radioresistens SK82 0.29 MPMX26_00569 Exopolyphosphatase 0.39 MPMX26_01224 putative metal-dependent hydrolase YcfH low > 36
Rahnella sp. WP5 0.29 EX31_RS22675 exopolyphosphatase 0.41 EX31_RS24470 metal-dependent hydrolase low > 89
Serratia liquefaciens MT49 0.29 IAI46_00570 exopolyphosphatase 0.41 IAI46_09825 metal-dependent hydrolase low > 86
Dickeya dianthicola ME23 0.29 DZA65_RS16050 exopolyphosphatase 0.39 DZA65_RS13620 metal-dependent hydrolase low > 75
Dickeya dadantii 3937 0.29 DDA3937_RS15155 exopolyphosphatase 0.40 DDA3937_RS13085 metal-dependent hydrolase low > 74
Dickeya dianthicola 67-19 0.29 HGI48_RS15230 exopolyphosphatase 0.39 HGI48_RS13150 metal-dependent hydrolase low > 71
Pectobacterium carotovorum WPP14 0.28 HER17_RS06420 exopolyphosphatase 0.40 HER17_RS08685 metal-dependent hydrolase low > 75
Escherichia coli ECRC99 0.28 KEDOAH_13545 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 KEDOAH_24215 ycfH metal-dependent hydrolase
Escherichia coli ECRC98 0.28 JDDGAC_18225 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 JDDGAC_07200 ycfH metal-dependent hydrolase low > 86
Escherichia coli BW25113 0.28 b3779 gpp guanosine pentaphosphatase/exopolyphosphatase (NCBI) 0.38 b1100 ycfH predicted metallodependent hydrolase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_04275 'Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase' transl_table=11 0.38 OHPLBJKB_02566 putative metal-dependent hydrolase YcfH low > 73
Escherichia coli ECRC102 0.28 NIAGMN_12360 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 NIAGMN_24290 ycfH metal-dependent hydrolase
Escherichia coli ECRC100 0.28 OKFHMN_14605 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 OKFHMN_03540 ycfH metal-dependent hydrolase low > 80
Escherichia coli ECRC101 0.28 MCAODC_05110 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 MCAODC_22900 ycfH metal-dependent hydrolase low > 87
Alteromonas macleodii MIT1002 0.28 MIT1002_00871 Exopolyphosphatase 0.39 MIT1002_01740 putative deoxyribonuclease YcfH low > 70
Escherichia coli BL21 0.28 ECD_03657 guanosine pentaphosphatase/exopolyphosphatase 0.38 ECD_01096 putative DNase low > 61
Escherichia coli ECOR27 0.28 NOLOHH_06740 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 NOLOHH_21070 ycfH metal-dependent hydrolase
Escherichia coli ECRC62 0.28 BNILDI_04785 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 BNILDI_19230 ycfH metal-dependent hydrolase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF2166 Exopolyphosphatase (EC 3.6.1.11) 0.37 GFF3382 Putative deoxyribonuclease YcfH low > 78
Escherichia coli ECOR38 0.28 HEPCGN_13315 gppA guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 HEPCGN_23940 ycfH metal-dependent hydrolase low > 87
Escherichia fergusonii Becca 0.28 EFB2_04859 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 0.37 EFB2_02875 putative metal-dependent hydrolase YcfH low > 86
Escherichia coli Nissle 1917 0.28 ECOLIN_RS21695 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.38 ECOLIN_RS06350 metal-dependent hydrolase low > 55
Shewanella oneidensis MR-1 0.27 SO2185 ppx exopolyphosphatase (NCBI ptt file) 0.34 SO2610 hydrolase, TatD family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_2418 Ppx/GppA phosphatase (RefSeq) 0.34 Shewana3_1769 TatD family hydrolase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.26 Sama_2012 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) 0.39 Sama_2040 TatD family hydrolase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.26 HP15_228 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 0.29 HP15_3420 hydrolase, TatD family low > 73
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_2313 Exopolyphosphatase 0.47 B158DRAFT_1745 hydrolase, TatD family low > 40
Shewanella loihica PV-4 0.24 Shew_3078 Ppx/GppA phosphatase (RefSeq) 0.34 Shew_1582 TatD family hydrolase (RefSeq) low > 60
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_0477 Exopolyphosphatase 0.26 Echvi_0081 hydrolase, TatD family low > 79

Not shown: 6 genomes with orthologs for GFF4229 only; 32 genomes with orthologs for GFF4665 only