Conservation of cofitness between GFF2548 and GFF4104 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2548 Glycogen debranching enzyme (EC 3.2.1.-) 1.0 GFF4104 DNA polymerase IV (EC 2.7.7.7) 0.52 14
Pantoea sp. MT58 0.87 IAI47_10665 glycogen debranching protein GlgX 0.80 IAI47_15175 DNA polymerase IV low > 76
Enterobacter sp. TBS_079 0.86 MPMX20_02327 Glycogen operon protein GlgX 0.88 MPMX20_00921 DNA polymerase IV low > 85
Klebsiella michiganensis M5al 0.85 BWI76_RS14140 glycogen debranching enzyme 0.88 BWI76_RS05530 DNA polymerase IV low > 92
Enterobacter asburiae PDN3 0.84 EX28DRAFT_1157 glycogen debranching enzyme GlgX 0.89 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 76
Rhizobium sp. OAE497 0.72 ABIE40_RS30515 glycogen debranching protein GlgX 0.34 ABIE40_RS27830 DNA polymerase IV low > 107
Azospirillum sp. SherDot2 0.58 MPMX19_04929 Glycogen operon protein GlgX 0.25 MPMX19_05504 DNA polymerase IV low > 112
Paraburkholderia graminis OAS925 0.58 ABIE53_005979 isoamylase 0.24 ABIE53_005211 DNA polymerase-4 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_02812 glycogen operon protein 0.22 H281DRAFT_01439 DNA polymerase-4 low > 103
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS10560 glycogen debranching protein GlgX 0.25 QEN71_RS08870 DNA polymerase IV low > 153
Azospirillum brasilense Sp245 0.57 AZOBR_RS19445 glycogen debranching protein 0.26 AZOBR_RS21200 DNA polymerase IV low > 97
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS26285 glycogen debranching protein 0.24 BPHYT_RS29110 DNA-directed DNA polymerase low > 109
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_4682 Glycogen debranching enzyme (EC 3.2.1.-) 0.44 Pf1N1B4_3165 DNA polymerase IV (EC 2.7.7.7) 0.27 43
Pseudomonas sp. RS175 0.56 PFR28_02150 Glycogen operon protein GlgX 0.45 PFR28_00492 DNA polymerase IV low > 88
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_3250 Glycogen debranching enzyme (EC 3.2.1.-) 0.33 PfGW456L13_4648 DNA polymerase IV (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_26000 glycogen debranching protein 0.44 AO356_05570 DNA polymerase IV low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_1073 Glycogen debranching enzyme (EC 3.2.1.-) 0.44 Pf6N2E2_2974 DNA polymerase IV (EC 2.7.7.7) low > 103
Pseudomonas putida KT2440 0.56 PP_4055 Glycogen debranching enzyme 0.43 PP_1203 DNA polymerase IV low > 96
Pseudomonas stutzeri RCH2 0.56 Psest_2167 glycogen debranching enzyme GlgX 0.45 Psest_1304 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 67
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_2997 Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region 0.44 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_2997 Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region 0.44 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_23750 glycogen debranching protein 0.43 AO353_16910 DNA polymerase IV low > 101
Pseudomonas fluorescens SBW25 0.55 PFLU_RS16435 glycogen debranching protein GlgX 0.45 PFLU_RS24490 DNA polymerase IV low > 109
Pseudomonas sp. S08-1 0.55 OH686_01305 glycogen debranching enzyme GlgX 0.45 OH686_18925 DNA polymerase IV low > 80
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS16435 glycogen debranching protein GlgX 0.45 PFLU_RS24490 DNA polymerase IV low > 109
Rahnella sp. WP5 0.55 EX31_RS07170 glycogen debranching protein GlgX 0.78 EX31_RS21005 DNA polymerase IV low > 89
Pseudomonas simiae WCS417 0.55 PS417_14505 glycogen debranching protein 0.45 PS417_22830 DNA polymerase IV low > 88
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.1331.1 Glycogen debranching enzyme (EC 3.2.1.-) 0.35 Xcc-8004.4535.1 DNA polymerase IV (EC 2.7.7.7) low > 74
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS17210 glycogen debranching protein GlgX 0.41 ABZR87_RS13550 DNA polymerase IV low > 80
Rhodospirillum rubrum S1H 0.52 Rru_A0505 Glycogen debranching enzyme GlgX (NCBI) 0.28 Rru_A3530 DNA-directed DNA polymerase (NCBI) low > 58
Variovorax sp. SCN45 0.51 GFF770 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) 0.23 GFF5999 DNA polymerase IV (EC 2.7.7.7) low > 127
Mucilaginibacter yixingensis YX-36 DSM 26809 0.51 ABZR88_RS11805 glycogen debranching protein GlgX 0.39 ABZR88_RS20685 DNA polymerase IV low > 71
Variovorax sp. OAS795 0.51 ABID97_RS12155 glycogen debranching protein GlgX 0.25 ABID97_RS07995 DNA polymerase IV low > 91
Ralstonia solanacearum GMI1000 0.50 RS_RS18300 glycogen debranching enzyme GlgX 0.42 RS_RS07995 DNA polymerase IV low > 80
Magnetospirillum magneticum AMB-1 0.50 AMB_RS15425 glycogen debranching enzyme GlgX 0.30 AMB_RS03210 DNA polymerase IV low > 64
Ralstonia solanacearum PSI07 0.50 RPSI07_RS00880 glycogen debranching enzyme GlgX 0.42 RPSI07_RS15755 DNA polymerase IV low > 81
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS12505 glycogen debranching protein 0.24 HSERO_RS21635 DNA-directed DNA polymerase low > 78
Ralstonia solanacearum UW163 0.49 UW163_RS22855 glycogen debranching enzyme GlgX 0.42 UW163_RS15040 DNA polymerase IV — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS22310 glycogen debranching enzyme GlgX 0.42 RALBFv3_RS01730 DNA polymerase IV low > 76
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_08570 glycogen debranching enzyme 0.38 CA264_08955 DNA polymerase IV low > 74
Shewanella sp. ANA-3 0.48 Shewana3_2933 glycogen debranching enzyme GlgX (RefSeq) 0.53 Shewana3_0949 DNA polymerase IV (RefSeq) low > 73
Shewanella loihica PV-4 0.48 Shew_1169 glycogen debranching enzyme GlgX (RefSeq) 0.57 Shew_2871 DNA polymerase IV (RefSeq) low > 60
Sinorhizobium meliloti 1021 0.47 SM_b21446 glycosyl hydrolase 0.38 SMa2355 DNA polymerase IV low > 103
Shewanella oneidensis MR-1 0.47 SO1495 glgX glycogen operon protein (NCBI ptt file) 0.55 SO1114 dinP DNA-damage-inducible protein P (NCBI ptt file) low > 76
Mycobacterium tuberculosis H37Rv 0.46 Rv1564c Probable maltooligosyltrehalose synthase TreX 0.18 Rv3056 Possible DNA-damage-inducible protein P DinP (DNA polymerase V) (pol IV 2) (DNA nucleotidyltransferase (DNA-directed)) low > 58
Shewanella amazonensis SB2B 0.36 Sama_2452 glycogen operon protein (RefSeq) 0.52 Sama_2527 DNA polymerase IV (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.36 MIT1002_02398 Glycogen debranching enzyme 0.58 MIT1002_03478 DNA polymerase IV low > 70
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_19235 glycogen debranching enzyme GlgX 0.55 CSW01_11635 DNA polymerase IV low > 62
Fusobacterium nucleatum SB010 0.25 HUW76_06915 glycogen-debranching protein 0.19 HUW76_04255 DNA polymerase IV low > 35

Not shown: 4 genomes with orthologs for GFF2548 only; 40 genomes with orthologs for GFF4104 only