Conservation of cofitness between Psest_0998 and Psest_0309 in Pseudomonas stutzeri RCH2

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0998 poly(A) polymerase 1.0 Psest_0309 RND family efflux transporter, MFP subunit 0.32 3
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_14395 poly(A) polymerase 0.61 AO353_17300 antibiotic transporter low > 101
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_16070 poly(A) polymerase 0.66 AO356_04875 antibiotic transporter low > 104
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.64 Pf1N1B4_3247 Multidrug efflux RND membrane fusion protein MexC — —
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.66 Pf6N2E2_2823 Multidrug efflux RND membrane fusion protein MexC low > 103
Pseudomonas sp. RS175 0.77 PFR28_03719 Poly(A) polymerase I 0.66 PFR28_00632 putative efflux pump periplasmic linker TtgA low > 88
Pseudomonas simiae WCS417 0.77 PS417_23900 poly(A) polymerase 0.64 PS417_06775 antibiotic transporter low > 88
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.63 PfGW456L13_4580 Multidrug efflux RND membrane fusion protein MexC low > 87
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.64 PFLU_RS06810 efflux RND transporter periplasmic adaptor subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.64 PFLU_RS06810 efflux RND transporter periplasmic adaptor subunit low > 109
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_0830 Poly(A) polymerase 0.64 Psyr_4007 Secretion protein HlyD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_0830 Poly(A) polymerase 0.64 Psyr_4007 Secretion protein HlyD low > 86
Pseudomonas sp. S08-1 0.76 OH686_17255 Poly(A) polymerase 0.72 OH686_16045 Multidrug efflux system, membrane fusion component low > 80
Pseudomonas putida KT2440 0.72 PP_4697 poly(A) polymerase 0.63 PP_1386 Probable efflux pump periplasmic linker TtgA low > 96
Alteromonas macleodii MIT1002 0.43 MIT1002_03692 Poly(A) polymerase I precursor 0.34 MIT1002_00134 Acriflavine resistance protein A precursor low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.44 Shewana3_4046 RND family efflux transporter MFP subunit (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.45 Sama_3553 multidrug resistance protein AcrA/AcrE family (RefSeq) low > 62
Shewanella loihica PV-4 0.43 Shew_3131 poly(A) polymerase (RefSeq) 0.41 Shew_0031 RND family efflux transporter MFP subunit (RefSeq) low > 60
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.44 SO4693 multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.49 DDA3937_RS05740 efflux RND transporter periplasmic adaptor subunit low > 74
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.48 DZA65_RS06120 efflux RND transporter periplasmic adaptor subunit low > 75
Serratia liquefaciens MT49 0.42 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.49 IAI46_05190 multidrug efflux RND transporter periplasmic adaptor subunit SdeX low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.47 Xcc-8004.1793.1 RND efflux system, membrane fusion protein CmeA low > 74
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.43 BPHYT_RS16175 hemolysin D low > 109
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0058 poly(A) polymerase 0.30 B158DRAFT_0734 RND family efflux transporter, MFP subunit low > 40
Dickeya dianthicola 67-19 0.42 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.48 HGI48_RS05795 efflux RND transporter periplasmic adaptor subunit low > 71
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS17235 poly(A) polymerase 0.43 RR42_RS32415 hemolysin D low > 128
Enterobacter sp. TBS_079 0.41 MPMX20_00829 Poly(A) polymerase I 0.49 MPMX20_01065 Multidrug efflux pump subunit AcrA low > 85
Lysobacter sp. OAE881 0.41 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.29 ABIE51_RS17985 efflux RND transporter periplasmic adaptor subunit low > 62
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3732 poly(A) polymerase 0.49 EX28DRAFT_2495 RND family efflux transporter, MFP subunit 0.69 3
Pectobacterium carotovorum WPP14 0.41 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.47 HER17_RS15735 efflux RND transporter periplasmic adaptor subunit low > 75
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.45 RS_RS21035 efflux RND transporter periplasmic adaptor subunit low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.45 RALBFv3_RS19790 efflux RND transporter periplasmic adaptor subunit low > 76
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.50 BWI76_RS06780 MexE family multidrug efflux RND transporter periplasmic adaptor subunit low > 92
Castellaniella sp019104865 MT123 0.41 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.33 ABCV34_RS04230 efflux RND transporter periplasmic adaptor subunit low > 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.47 GFF4380 Membrane fusion protein of RND family multidrug efflux pump low > 78
Escherichia coli BW25113 0.40 b0143 pcnB poly(A) polymerase I (VIMSS) 0.50 b0463 acrA multidrug efflux system (NCBI) low > 76
Escherichia coli Nissle 1917 0.40 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.49 ECOLIN_RS02755 multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.29 LRK55_RS01870 efflux RND transporter periplasmic adaptor subunit low > 63
Ralstonia solanacearum PSI07 0.40 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.44 RPSI07_RS03395 efflux RND transporter periplasmic adaptor subunit low > 81
Escherichia coli ECOR27 0.40 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.50 NOLOHH_01135 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA low > 57
Escherichia coli ECRC101 0.40 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.50 OKFHMN_08200 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Pantoea sp. MT58 0.40 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.47 IAI47_14510 efflux RND transporter periplasmic adaptor subunit low > 76
Escherichia coli ECOR38 0.40 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.49 HEPCGN_06815 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA low > 85
Escherichia coli ECRC102 0.40 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.50 NIAGMN_06255 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Escherichia coli ECRC98 0.40 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.50 JDDGAC_11850 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Escherichia coli ECRC101 0.40 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.50 MCAODC_27425 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03519 Poly(A) polymerase I 0.50 OHPLBJKB_03211 Multidrug efflux pump subunit AcrA low > 73
Escherichia coli BL21 0.40 ECD_00142 poly(A) polymerase 0.50 ECD_00414 multidrug efflux system low > 60
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.29 LRK54_RS02095 efflux RND transporter periplasmic adaptor subunit low > 59
Escherichia coli ECRC99 0.40 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.50 KEDOAH_19765 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Escherichia fergusonii Becca 0.40 EFB2_03901 Poly(A) polymerase I 0.49 EFB2_03595 Multidrug efflux pump subunit AcrA low > 86
Escherichia coli ECRC62 0.40 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.50 BNILDI_22550 acrA multidrug efflux RND transporter periplasmic adaptor subunit AcrA — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.39 ABZR87_RS05310 efflux RND transporter periplasmic adaptor subunit low > 80
Erwinia tracheiphila SCR3 0.40 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.48 LU632_RS18180 efflux RND transporter periplasmic adaptor subunit — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.30 OKGIIK_09165 acrA efflux transporter periplasmic adaptor subunit low > 52
Dechlorosoma suillum PS 0.39 Dsui_1515 poly(A) polymerase 0.31 Dsui_3181 RND family efflux transporter, MFP subunit low > 51
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.45 ABZR86_RS18280 efflux RND transporter periplasmic adaptor subunit low > 74
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.34 Ac3H11_4449 RND efflux system, membrane fusion protein CmeA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.42 GFF5686 RND efflux system, membrane fusion protein CmeA low > 90
Acinetobacter radioresistens SK82 0.33 MPMX26_00543 Poly(A) polymerase I 0.38 MPMX26_00690 Multidrug efflux pump subunit AcrA low > 36

Not shown: 2 genomes with orthologs for Psest_0998 only; 23 genomes with orthologs for Psest_0309 only