| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3296 | | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | 1.0 | Psest_3100 | | RNA polymerase sigma factor RpoE | 0.72 | 1 |
| Pseudomonas putida KT2440 | 0.76 | PP_1301 | | quality control serine endoprotease DegS | 0.94 | PP_1427 | | RNA polymerase sigma E factor | 0.55 | 1 |
| Pseudomonas fluorescens FW300-N1B4 | 0.75 | Pf1N1B4_1061 | | Outer membrane stress sensor protease DegS | 0.94 | Pf1N1B4_3323 | | RNA polymerase sigma-H factor AlgT | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_16655 | | 2-alkenal reductase | 0.94 | AO356_04575 | | RNA polymerase subunit sigma | 0.84 | 1 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_03705 | | 2-alkenal reductase | 0.94 | PS417_07120 | | RNA polymerase sigma-H factor | 0.51 | 1 |
| Pseudomonas fluorescens FW300-N2E2 | 0.74 | Pf6N2E2_5255 | | Outer membrane stress sensor protease DegS | 0.94 | Pf6N2E2_2756 | | RNA polymerase sigma-H factor AlgT | 0.79 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.73 | PfGW456L13_4998 | | Outer membrane stress sensor protease DegS | 0.94 | PfGW456L13_4516 | | RNA polymerase sigma-H factor AlgT | 0.52 | 1 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_00191 | | Serine endoprotease DegS | 0.94 | PFR28_00690 | | RNA polymerase sigma-H factor | 0.83 | 1 |
| Pseudomonas syringae pv. syringae B728a | 0.72 | Psyr_4130 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | 0.94 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | 0.96 | 1 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.72 | Psyr_4130 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | 0.94 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | 0.92 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.72 | AO353_05090 | | 2-alkenal reductase | 0.94 | AO353_17625 | | RNA polymerase subunit sigma | 0.70 | 1 |
| Pseudomonas sp. S08-1 | 0.71 | OH686_08460 | | Outer membrane stress sensor protease DegS | 0.94 | OH686_20045 | | RNA polymerase sigma factor RpoE | 0.74 | 47 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS03755 | | PDZ domain-containing protein | 0.94 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS03755 | | PDZ domain-containing protein | 0.94 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | 0.81 | 2 |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS06745 | | 2-alkenal reductase | 0.62 | RALBFv3_RS14445 | | RNA polymerase sigma factor RpoE | 0.58 | 2 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS10490 | | PDZ domain-containing protein | 0.62 | RPSI07_RS19015 | | RNA polymerase sigma factor RpoE | low | > 81 |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS06870 | | 2-alkenal reductase | 0.62 | UW163_RS11910 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS14690 | | PDZ domain-containing protein | 0.62 | RS_RS05225 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS18840 | | 2-alkenal reductase | 0.62 | RR42_RS14080 | | RNA polymerase sigma factor RpoE | 0.69 | 2 |
| Burkholderia phytofirmans PsJN | 0.48 | BPHYT_RS17640 | | 2-alkenal reductase | 0.61 | BPHYT_RS14405 | | RNA polymerase sigma factor RpoE | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS20260 | | 2-alkenal reductase | 0.62 | HSERO_RS09625 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS02400 | | Do family serine endopeptidase | 0.61 | ABZR87_RS10165 | | RNA polymerase sigma factor RpoE | 0.68 | 1 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_05667 | | serine protease DegQ | 0.60 | H281DRAFT_04355 | | RNA polymerase, sigma-24 subunit, RpoE | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.47 | QEN71_RS27795 | | Do family serine endopeptidase | 0.60 | QEN71_RS04575 | | RNA polymerase sigma factor RpoE | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_003687 | | serine protease DegQ | 0.61 | ABIE53_003043 | | RNA polymerase sigma-70 factor (ECF subfamily) | 0.59 | 7 |
| Dechlorosoma suillum PS | 0.45 | Dsui_1426 | | periplasmic serine protease, Do/DeqQ family | 0.61 | Dsui_2453 | | RNA polymerase sigma factor RpoE | — | — |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_4743 | | Outer membrane stress sensor protease DegS | 0.49 | Ac3H11_1573 | | RNA polymerase sigma factor RpoE | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF1300 | | Outer membrane stress sensor protease DegS | 0.49 | GFF3339 | | RNA polymerase sigma factor RpoE | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS12650 | | trypsin-like peptidase domain-containing protein | 0.58 | ABCV34_RS08355 | | RNA polymerase sigma factor RpoE | low | > 48 |
| Variovorax sp. SCN45 | 0.41 | GFF5365 | | Outer membrane stress sensor protease DegS | 0.48 | GFF3863 | | RNA polymerase sigma factor RpoE | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS09885 | | trypsin-like peptidase domain-containing protein | 0.67 | ABZR86_RS07180 | | RNA polymerase sigma factor RpoE | 0.32 | 31 |
| Shewanella amazonensis SB2B | 0.35 | Sama_3074 | | protease DegS (RefSeq) | 0.65 | Sama_0874 | | RNA polymerase sigma factor RpoE (RefSeq) | 0.90 | 1 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_0689 | | DegS serine peptidase (RefSeq) | 0.71 | Shewana3_3032 | | RNA polymerase sigma factor RpoE (RefSeq) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_03000 | degQ | peptidase S1 | 0.68 | OKGIIK_07900 | rpoE | RNA polymerase sigma factor RpoE | 0.89 | 1 |
| Shewanella oneidensis MR-1 | 0.32 | SO3943 | degS | protease DegS (NCBI ptt file) | 0.72 | SO1342 | rpoE | RNA polymerase sigma-24 factor (NCBI ptt file) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_03015 | | outer membrane-stress sensor serine endopeptidase DegS | 0.67 | CSW01_12485 | | RNA polymerase sigma factor RpoE | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS13760 | | trypsin-like peptidase domain-containing protein | 0.68 | LRK54_RS16940 | | RNA polymerase sigma factor RpoE | 0.94 | 1 |
| Erwinia tracheiphila SCR3 | 0.32 | LU632_RS21360 | degS | outer membrane-stress sensor serine endopeptidase DegS | 0.66 | LU632_RS15425 | rpoE | RNA polymerase sigma factor RpoE | 0.95 | 2 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS01515 | | outer membrane-stress sensor serine endopeptidase DegS | 0.65 | HGI48_RS15850 | | RNA polymerase sigma factor RpoE | 0.86 | 1 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_22395 | | outer membrane-stress sensor serine endopeptidase DegS | 0.66 | IAI46_19585 | | RNA polymerase sigma factor RpoE | — | — |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS01580 | | outer membrane-stress sensor serine endopeptidase DegS | 0.65 | DZA65_RS16930 | | RNA polymerase sigma factor RpoE | 0.95 | 1 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS01600 | | outer membrane-stress sensor serine endopeptidase DegS | 0.66 | DDA3937_RS15765 | | RNA polymerase sigma factor RpoE | 0.95 | 1 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS13475 | | trypsin-like peptidase domain-containing protein | 0.68 | LRK55_RS16655 | | RNA polymerase sigma factor RpoE | — | — |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_04139 | | Serine endoprotease DegS | 0.66 | MPMX20_03444 | | ECF RNA polymerase sigma-E factor | — | — |
| Pantoea sp. MT58 | 0.31 | IAI47_17265 | | outer membrane-stress sensor serine endopeptidase DegS | 0.66 | IAI47_04850 | | RNA polymerase sigma factor RpoE | — | — |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_00841 | | Serine endoprotease DegS precursor | 0.71 | MIT1002_02719 | | Sigma-24 | — | — |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS25370 | | outer membrane-stress sensor serine endopeptidase DegS | 0.65 | BWI76_RS21355 | | RNA polymerase sigma factor RpoE | — | — |
Not shown: 2 genomes with orthologs for Psest_3296 only; 36 genomes with orthologs for Psest_3100 only