Conservation of cofitness between HP15_272 and HP15_1829 in Marinobacter adhaerens HP15

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_272 biosynthetic arginine decarboxylase 1.0 HP15_1829 tRNA pseudouridine synthase A 0.48 10
Shewanella sp. ANA-3 0.56 Shewana3_1624 arginine decarboxylase (RefSeq) 0.48 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Shewanella loihica PV-4 0.56 Shew_1619 arginine decarboxylase (RefSeq) 0.47 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Shewanella amazonensis SB2B 0.55 Sama_1963 arginine decarboxylase (RefSeq) 0.49 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) 0.46 B158DRAFT_1483 pseudouridylate synthase I low > 40
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_18235 arginine decarboxylase 0.47 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Serratia liquefaciens MT49 0.54 IAI46_21140 biosynthetic arginine decarboxylase 0.47 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Rahnella sp. WP5 0.53 EX31_RS21355 biosynthetic arginine decarboxylase 0.47 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Escherichia coli BL21 0.53 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.46 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli BW25113 0.53 b2938 speA arginine decarboxylase (NCBI) 0.47 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Dickeya dianthicola 67-19 0.53 HGI48_RS18460 biosynthetic arginine decarboxylase 0.47 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS19595 biosynthetic arginine decarboxylase 0.47 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia fergusonii Becca 0.53 EFB2_00962 Biosynthetic arginine decarboxylase 0.46 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00778 Biosynthetic arginine decarboxylase 0.46 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECOR38 0.53 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.46 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli ECRC101 0.53 OKFHMN_19305 speA biosynthetic arginine decarboxylase 0.46 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECOR27 0.53 NOLOHH_11175 speA biosynthetic arginine decarboxylase 0.46 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Escherichia coli ECRC101 0.53 MCAODC_09825 speA biosynthetic arginine decarboxylase 0.46 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.53 KEDOAH_08835 speA biosynthetic arginine decarboxylase 0.46 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.53 BNILDI_09755 speA biosynthetic arginine decarboxylase 0.46 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS16350 biosynthetic arginine decarboxylase 0.46 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECRC102 0.53 NIAGMN_17070 speA biosynthetic arginine decarboxylase 0.46 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.53 JDDGAC_22935 speA biosynthetic arginine decarboxylase 0.46 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Pectobacterium carotovorum WPP14 0.53 HER17_RS02665 biosynthetic arginine decarboxylase 0.46 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dadantii 3937 0.53 DDA3937_RS18535 biosynthetic arginine decarboxylase 0.47 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.47 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Pantoea sp. MT58 0.53 IAI47_03660 biosynthetic arginine decarboxylase 0.42 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Klebsiella michiganensis M5al 0.53 BWI76_RS24030 arginine decarboxylase 0.46 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Enterobacter sp. TBS_079 0.52 MPMX20_03799 Biosynthetic arginine decarboxylase 0.47 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Erwinia tracheiphila SCR3 0.52 LU632_RS05510 speA biosynthetic arginine decarboxylase 0.44 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) 0.47 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Pseudomonas sp. S08-1 0.47 OH686_07545 arginine decarboxylase 0.47 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.45 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Lysobacter sp. OAE881 0.47 ABIE51_RS00125 arginine decarboxylase 0.42 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_15625 speA biosynthetic arginine decarboxylase 0.34 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4381 arginine decarboxylase 0.46 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_13720 arginine decarboxylase 0.45 AO353_20660 pseudouridine synthase low > 101
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4381 arginine decarboxylase 0.46 Psyr_1662 tRNA pseudouridine synthase 0.43 66
Pseudomonas putida KT2440 0.46 PP_0567 Biosynthetic arginine decarboxylase 0.47 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Pseudomonas stutzeri RCH2 0.46 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.44 Psest_2585 pseudouridylate synthase I low > 67
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.46 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.46 PFLU_RS03080 arginine decarboxylase 0.46 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas simiae WCS417 0.46 PS417_03005 arginine decarboxylase 0.46 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS03080 arginine decarboxylase 0.46 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.28 41
Pseudomonas sp. RS175 0.46 PFR28_05228 Biosynthetic arginine decarboxylase 0.45 PFR28_02817 tRNA pseudouridine synthase A 0.33 15
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.46 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_08155 arginine decarboxylase 0.46 AO356_21435 pseudouridine synthase low > 104
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.38 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS15580 biosynthetic arginine decarboxylase 0.34 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS09140 arginine decarboxylase 0.37 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS08670 arginine decarboxylase 0.37 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA — —
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS02535 biosynthetic arginine decarboxylase 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA low > 56
Bacteroides ovatus ATCC 8483 0.41 BACOVA_01911 arginine 2-monooxygenase 0.25 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Bacteroides thetaiotaomicron VPI-5482 0.40 BT3394 putative arginine decarboxylase (NCBI ptt file) 0.24 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS12110 biosynthetic arginine decarboxylase 0.24 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA low > 67
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS15005 biosynthetic arginine decarboxylase 0.23 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA low > 61
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS04690 biosynthetic arginine decarboxylase 0.25 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_1037 speA arginine decarboxylase 0.27 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_1536 arginine decarboxylase (RefSeq) 0.20 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU0417 speA arginine decarboxylase (TIGR) 0.22 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Alteromonas macleodii MIT1002 0.35 MIT1002_03905 Biosynthetic arginine decarboxylase 0.46 MIT1002_02529 tRNA pseudouridine synthase A low > 70

Not shown: 1 genomes with orthologs for HP15_272 only; 39 genomes with orthologs for HP15_1829 only