Conservation of cofitness between Psest_0998 and Psest_0181 in Pseudomonas stutzeri RCH2

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0998 poly(A) polymerase 1.0 Psest_0181 glycine cleavage system T protein 0.27 9
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_14395 poly(A) polymerase 0.78 AO353_08735 glycine cleavage system protein T low > 101
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_16070 poly(A) polymerase 0.80 AO356_13035 glycine cleavage system protein T low > 104
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.79 Pf6N2E2_4485 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 103
Pseudomonas sp. RS175 0.77 PFR28_03719 Poly(A) polymerase I 0.78 PFR28_04316 Aminomethyltransferase low > 88
Pseudomonas simiae WCS417 0.77 PS417_23900 poly(A) polymerase 0.81 PS417_27255 glycine cleavage system protein T low > 88
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.80 PfGW456L13_902 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 87
Pseudomonas fluorescens SBW25 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.80 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT low > 109
Pseudomonas fluorescens SBW25-INTG 0.76 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.80 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT low > 109
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_0830 Poly(A) polymerase 0.78 Psyr_0246 aminomethyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_0830 Poly(A) polymerase 0.78 Psyr_0246 aminomethyltransferase low > 86
Pseudomonas sp. S08-1 0.76 OH686_17255 Poly(A) polymerase 0.84 OH686_11175 glycine cleavage system T protein low > 80
Pseudomonas putida KT2440 0.72 PP_4697 poly(A) polymerase 0.75 PP_5194 aminomethyltransferase low > 96
Alteromonas macleodii MIT1002 0.43 MIT1002_03692 Poly(A) polymerase I precursor 0.61 MIT1002_02973 Aminomethyltransferase low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.58 Shewana3_3501 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.59 Sama_2721 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.59 SO0779 gcvT glycine cleavage system T protein (NCBI ptt file) 0.52 3
Shewanella loihica PV-4 0.43 Shew_3131 poly(A) polymerase (RefSeq) 0.58 Shew_3064 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) low > 60
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.59 DDA3937_RS03245 glycine cleavage system aminomethyltransferase GcvT low > 74
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.22 CSW01_15350 glycine cleavage system aminomethyltransferase T low > 62
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.58 DZA65_RS03435 glycine cleavage system aminomethyltransferase GcvT low > 75
Serratia liquefaciens MT49 0.42 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.60 IAI46_20860 glycine cleavage system aminomethyltransferase GcvT low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.55 Xcc-8004.1567.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 74
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0058 poly(A) polymerase 0.59 B158DRAFT_0543 glycine cleavage system T protein — —
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.47 BPHYT_RS19320 glycine cleavage system protein T low > 109
Dickeya dianthicola 67-19 0.42 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.59 HGI48_RS03390 glycine cleavage system aminomethyltransferase GcvT low > 71
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS17235 poly(A) polymerase 0.46 RR42_RS20060 glycine cleavage system protein T low > 128
Enterobacter sp. TBS_079 0.41 MPMX20_00829 Poly(A) polymerase I 0.59 MPMX20_03764 Aminomethyltransferase low > 85
Lysobacter sp. OAE881 0.41 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.53 ABIE51_RS16365 glycine cleavage system aminomethyltransferase GcvT low > 62
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3732 poly(A) polymerase 0.59 EX28DRAFT_2957 glycine cleavage system T protein low > 76
Pectobacterium carotovorum WPP14 0.41 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.59 HER17_RS18005 glycine cleavage system aminomethyltransferase GcvT low > 75
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.48 RALBFv3_RS08650 glycine cleavage system protein T 0.69 35
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.48 RS_RS16500 aminomethyltransferase low > 80
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.59 BWI76_RS23880 Aminomethyltransferase (EC 2.1.2.10) (from data) low > 92
Castellaniella sp019104865 MT123 0.41 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.53 ABCV34_RS08845 glycine cleavage system aminomethyltransferase GcvT low > 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.59 GFF3005 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 78
Escherichia coli Nissle 1917 0.40 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.60 ECOLIN_RS16175 glycine cleavage system aminomethyltransferase GcvT low > 52
Escherichia coli BW25113 0.40 b0143 pcnB poly(A) polymerase I (VIMSS) 0.60 b2905 gcvT glycine cleavage system aminomethyltransferase T (NCBI) 0.26 54
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03519 Poly(A) polymerase I 0.60 OHPLBJKB_00810 Aminomethyltransferase low > 73
Ralstonia solanacearum PSI07 0.40 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.48 RPSI07_RS08585 glycine cleavage system protein T low > 81
Pantoea sp. MT58 0.40 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.59 IAI47_03765 glycine cleavage system aminomethyltransferase GcvT 0.37 59
Escherichia fergusonii Becca 0.40 EFB2_03901 Poly(A) polymerase I 0.60 EFB2_00997 Aminomethyltransferase low > 86
Escherichia coli ECRC101 0.40 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.60 MCAODC_10040 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.55 LRK54_RS05510 glycine cleavage system aminomethyltransferase GcvT low > 59
Escherichia coli ECRC62 0.40 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.60 BNILDI_09970 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Escherichia coli ECOR27 0.40 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.60 NOLOHH_11435 gcvT glycine cleavage system aminomethyltransferase GcvT low > 57
Escherichia coli ECRC101 0.40 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.60 OKFHMN_19520 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.55 LRK55_RS05280 glycine cleavage system aminomethyltransferase GcvT low > 63
Escherichia coli BL21 0.40 ECD_00142 poly(A) polymerase 0.60 ECD_02737 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex low > 60
Escherichia coli ECRC99 0.40 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.60 KEDOAH_08620 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Escherichia coli ECOR38 0.40 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.60 HEPCGN_18810 gcvT glycine cleavage system aminomethyltransferase GcvT low > 85
Escherichia coli ECRC98 0.40 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.60 JDDGAC_23160 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Escherichia coli ECRC102 0.40 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.60 NIAGMN_17285 gcvT glycine cleavage system aminomethyltransferase GcvT — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.47 ABZR87_RS03925 glycine cleavage system aminomethyltransferase GcvT low > 80
Erwinia tracheiphila SCR3 0.40 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.58 LU632_RS05905 gcvT glycine cleavage system aminomethyltransferase GcvT low > 74
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.55 OKGIIK_01305 gcvT glycine cleavage system aminomethyltransferase GcvT low > 52
Dechlorosoma suillum PS 0.39 Dsui_1515 poly(A) polymerase 0.53 Dsui_2735 glycine cleavage system T protein low > 51
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.55 ABZR86_RS18875 glycine cleavage system aminomethyltransferase GcvT low > 74
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.25 Ac3H11_165 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.27 GFF5213 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) low > 90

Not shown: 3 genomes with orthologs for Psest_0998 only; 35 genomes with orthologs for Psest_0181 only