Conservation of cofitness between GFF149 and GFF1331 in Hydrogenophaga sp. GW460-11-11-14-LB1

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 1.0 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) 0.48 3
Variovorax sp. OAS795 0.77 ABID97_RS07235 phosphoglycerate dehydrogenase 0.69 ABID97_RS23255 3-dehydroquinate synthase — —
Acidovorax sp. GW101-3H11 0.76 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.71 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) low > 79
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_08510 3-phosphoglycerate dehydrogenase 0.50 AO353_12505 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_10300 3-phosphoglycerate dehydrogenase 0.51 AO356_09385 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS28695 phosphoglycerate dehydrogenase 0.50 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS28695 phosphoglycerate dehydrogenase 0.50 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas simiae WCS417 0.75 PS417_27040 3-phosphoglycerate dehydrogenase 0.50 PS417_01985 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.51 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas sp. RS175 0.75 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.50 PFR28_05013 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.51 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas sp. S08-1 0.74 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.48 OH686_10015 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.49 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.49 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.51 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) 0.61 70
Variovorax sp. SCN45 0.74 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.66 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) low > 127
Pseudomonas putida KT2440 0.73 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.51 PP_5078 3-dehydroquinate synthase — —
Pseudomonas stutzeri RCH2 0.73 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.50 Psest_3713 3-dehydroquinate synthase — —
Marinobacter adhaerens HP15 0.68 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.50 HP15_480 3-dehydroquinate synthase — —
Shewanella sp. ANA-3 0.65 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.49 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.85 48
Shewanella oneidensis MR-1 0.64 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.50 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) 0.78 71
Shewanella amazonensis SB2B 0.64 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.50 Sama_3367 3-dehydroquinate synthase (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS03185 phosphoglycerate dehydrogenase 0.38 LRK54_RS04310 3-dehydroquinate synthase — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS02935 phosphoglycerate dehydrogenase 0.38 LRK55_RS04085 3-dehydroquinate synthase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.39 OKGIIK_11185 aroB 3-dehydroquinate synthase — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.39 ABZR86_RS10480 3-dehydroquinate synthase low > 74
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.40 B158DRAFT_0764 3-dehydroquinate synthase (EC 4.2.3.4) low > 40
Shewanella loihica PV-4 0.63 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.48 Shew_0214 3-dehydroquinate synthase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.63 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.46 MPMX26_02810 3-dehydroquinate synthase — —
Alteromonas macleodii MIT1002 0.62 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.46 MIT1002_00447 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.62 DZA65_RS19540 phosphoglycerate dehydrogenase 0.46 DZA65_RS20760 3-dehydroquinate synthase — —
Dickeya dianthicola 67-19 0.62 HGI48_RS18400 phosphoglycerate dehydrogenase 0.46 HGI48_RS19675 3-dehydroquinate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.37 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) low > 74
Dickeya dadantii 3937 0.62 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.46 DDA3937_RS19545 3-dehydroquinate synthase — —
Enterobacter sp. TBS_079 0.62 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.48 MPMX20_04278 3-dehydroquinate synthase 0.81 51
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.48 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) — —
Erwinia tracheiphila SCR3 0.61 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.47 LU632_RS22865 aroB 3-dehydroquinate synthase low > 74
Klebsiella michiganensis M5al 0.61 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.47 BWI76_RS26085 3-dehydroquinate synthase 0.68 66
Pectobacterium carotovorum WPP14 0.61 HER17_RS02725 phosphoglycerate dehydrogenase 0.46 HER17_RS01780 3-dehydroquinate synthase 0.88 32
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_12555 phosphoglycerate dehydrogenase 0.49 CSW01_13300 3-dehydroquinate synthase low > 62
Serratia liquefaciens MT49 0.61 IAI46_20900 phosphoglycerate dehydrogenase 0.48 IAI46_23700 3-dehydroquinate synthase low > 86
Pantoea sp. MT58 0.60 IAI47_03725 phosphoglycerate dehydrogenase 0.50 IAI47_01895 3-dehydroquinate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.47 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) low > 78
Rahnella sp. WP5 0.60 EX31_RS21470 phosphoglycerate dehydrogenase 0.49 EX31_RS04720 3-dehydroquinate synthase — —
Lysobacter sp. OAE881 0.60 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.41 ABIE51_RS16100 3-dehydroquinate synthase — —
Escherichia coli ECRC101 0.60 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.48 MCAODC_07645 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC102 0.60 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.48 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.47 ECOLIN_RS19360 3-dehydroquinate synthase low > 52
Escherichia coli ECRC101 0.60 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.48 OKFHMN_17115 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC99 0.60 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.48 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli ECOR27 0.60 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.48 NOLOHH_08905 aroB 3-dehydroquinate synthase low > 57
Escherichia coli ECRC98 0.60 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.48 JDDGAC_20745 aroB 3-dehydroquinate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.48 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Escherichia coli ECOR38 0.60 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.48 HEPCGN_15935 aroB 3-dehydroquinate synthase low > 85
Escherichia coli BL21 0.60 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.48 ECD_03241 3-dehydroquinate synthase low > 60
Escherichia coli BW25113 0.60 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.48 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.89 14
Escherichia coli ECRC62 0.59 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.48 BNILDI_02615 aroB 3-dehydroquinate synthase — —
Escherichia fergusonii Becca 0.59 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.48 EFB2_00439 3-dehydroquinate synthase low > 86
Azospirillum brasilense Sp245 0.56 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.38 AZOBR_RS03220 3-dehydroquinate synthase — —
Azospirillum sp. SherDot2 0.56 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.37 MPMX19_02639 3-dehydroquinate synthase — —
Rhodospirillum rubrum S1H 0.56 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.38 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Rhizobium sp. OAE497 0.53 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.34 ABIE40_RS17670 3-dehydroquinate synthase — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.53 ABCV34_RS12705 3-dehydroquinate synthase — —
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.59 RR42_RS19005 3-dehydroquinate synthase low > 128

Not shown: 2 genomes with orthologs for GFF149 only; 25 genomes with orthologs for GFF1331 only