| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_05880 | | ribosomal protein S12 methylthiotransferase | 1.0 | PS417_06175 | | cysteine sulfinate desulfinase | 0.23 | 18 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS05950 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.98 | PFLU_RS06240 | | cysteine desulfurase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS05950 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.98 | PFLU_RS06240 | | cysteine desulfurase | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.97 | Pf1N1B4_3160 | | Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase | 0.88 | Pf1N1B4_3076 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.96 | PfGW456L13_4653 | | Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase | 0.86 | PfGW456L13_4717 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 87 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_00486 | | Ribosomal protein S12 methylthiotransferase RimO | 0.83 | PFR28_00389 | | Cysteine desulfurase SufS | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.96 | AO353_16875 | | ribosomal protein S12 methylthiotransferase RimO | 0.85 | AO353_16430 | | cysteine sulfinate desulfinase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.95 | AO356_05600 | | ribosomal protein S12 methylthiotransferase RimO | 0.88 | AO356_06075 | | cysteine sulfinate desulfinase | 0.38 | 4 |
| Pseudomonas fluorescens FW300-N2E2 | 0.94 | Pf6N2E2_2978 | | Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase | 0.88 | Pf6N2E2_3079 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_1392 | | SSU ribosomal protein S12P methylthiotransferase | 0.80 | Psyr_1335 | | Aminotransferase, class V | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_1392 | | SSU ribosomal protein S12P methylthiotransferase | 0.80 | Psyr_1335 | | Aminotransferase, class V | low | > 86 |
| Pseudomonas putida KT2440 | 0.89 | PP_1197 | | ribosomal protein S12 methylthiotransferase | 0.80 | PP_1529 | | Probable cysteine desulfurase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_18875 | | ribosomal protein S12 methylthiotransferase RimO | 0.72 | OH686_06515 | | Cysteine desulfurase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_2632 | | ribosomal protein S12 methylthiotransferase RimO | 0.72 | Psest_1464 | | Selenocysteine lyase | low | > 67 |
| Castellaniella sp019104865 MT123 | 0.76 | ABCV34_RS14230 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | ABCV34_RS04680 | | cysteine desulfurase | — | — |
| Marinobacter adhaerens HP15 | 0.75 | HP15_2459 | | MiaB-like tRNA modifying enzyme YliG | 0.44 | HP15_2987 | | cysteine desulfurase, SufS subfamily | — | — |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS09580 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.37 | LU632_RS06240 | csdA | cysteine desulfurase CsdA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF731 | | Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase | 0.38 | GFF3562 | | Cysteine desulfurase (EC 2.8.1.7), SufS subfamily | low | > 78 |
| Escherichia coli BW25113 | 0.71 | b0835 | yliG | predicted SAM-dependent methyltransferase (NCBI) | 0.38 | b2810 | csdA | cysteine sulfinate desulfinase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_01970 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | HEPCGN_19360 | csdA | cysteine desulfurase CsdA | low | > 87 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_22430 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | NOLOHH_11985 | csdA | cysteine desulfurase CsdA | low | > 75 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_25275 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | MCAODC_10630 | csdA | cysteine desulfurase CsdA | low | > 87 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_04105 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | NIAGMN_17875 | csdA | cysteine desulfurase CsdA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_02875 | | Ribosomal protein S12 methylthiotransferase RimO | 0.37 | OHPLBJKB_00921 | | Cysteine desulfurase CsdA | low | > 73 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_21850 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | KEDOAH_08025 | csdA | cysteine desulfurase CsdA | — | — |
| Escherichia coli ECRC62 | 0.71 | BNILDI_20690 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | BNILDI_10490 | csdA | cysteine desulfurase CsdA | low | > 75 |
| Escherichia coli BL21 | 0.71 | ECD_00802 | | ribosomal protein S12 methylthiotransferase | 0.38 | ECD_02661 | | cysteine sulfinate desulfinase | low | > 61 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_09695 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | JDDGAC_23770 | csdA | cysteine desulfurase CsdA | low | > 86 |
| Escherichia fergusonii Becca | 0.71 | EFB2_03271 | | Ribosomal protein S12 methylthiotransferase RimO | 0.38 | EFB2_01107 | | Cysteine desulfurase CsdA | low | > 86 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_06060 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | OKFHMN_20105 | csdA | cysteine desulfurase CsdA | low | > 80 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS04440 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | ECOLIN_RS15660 | | cysteine desulfurase CsdA | — | — |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS09115 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.38 | BWI76_RS22965 | | cysteine sulfinate desulfinase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.70 | EX28DRAFT_2131 | | ribosomal protein S12 methylthiotransferase RimO | 0.37 | EX28DRAFT_2886 | | cysteine desulfurase, catalytic subunit CsdA | low | > 76 |
| Azospirillum sp. SherDot2 | 0.70 | MPMX19_05761 | | Ribosomal protein S12 methylthiotransferase RimO | 0.38 | MPMX19_04833 | | Cysteine desulfurase | — | — |
| Pectobacterium carotovorum WPP14 | 0.70 | HER17_RS12755 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | HER17_RS16425 | | cysteine desulfurase CsdA | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_13260 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.44 | CSW01_11740 | | cysteine desulfurase CsdA | low | > 62 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS09400 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | HGI48_RS05045 | | cysteine desulfurase CsdA | low | > 71 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_01473 | | Ribosomal protein S12 methylthiotransferase RimO | 0.37 | MPMX20_03673 | | Cysteine desulfurase CsdA | low | > 85 |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS09710 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | DZA65_RS05385 | | cysteine desulfurase CsdA | low | > 75 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS09385 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.41 | DDA3937_RS05040 | | cysteine desulfurase CsdA | low | > 74 |
| Rhodospirillum rubrum S1H | 0.69 | Rru_A2811 | | hypothetical protein (NCBI) | 0.40 | Rru_A2570 | | Cysteine desulphurases, SufS (NCBI) | — | — |
| Alteromonas macleodii MIT1002 | 0.67 | MIT1002_01933 | | Ribosomal protein S12 methylthiotransferase RimO | 0.44 | MIT1002_02797 | | putative cysteine desulfurase | — | — |
| Bosea sp. OAE506 | 0.65 | ABIE41_RS15895 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.37 | ABIE41_RS16975 | | cysteine desulfurase | — | — |
| Lysobacter sp. OAE881 | 0.65 | ABIE51_RS08160 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.37 | ABIE51_RS15745 | | cysteine desulfurase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.65 | LRK54_RS01780 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.35 | LRK54_RS03080 | | cysteine desulfurase | — | — |
| Rhodanobacter denitrificans MT42 | 0.64 | LRK55_RS01560 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.35 | LRK55_RS02830 | | cysteine desulfurase | — | — |
| Shewanella amazonensis SB2B | 0.64 | Sama_0485 | | MiaB-like putative RNA modifying enzyme YliG (RefSeq) | 0.42 | Sama_2777 | | aminotransferase, class V (RefSeq) | 0.49 | 17 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_3627 | | MiaB-like tRNA modifying enzyme YliG (RefSeq) | 0.41 | Shewana3_0808 | | cysteine desulfurase (RefSeq) | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.63 | OKGIIK_04755 | rimO | 30S ribosomal protein S12 methylthiotransferase RimO | 0.35 | OKGIIK_09950 | sufS,csdA | cysteine desulfurase CsdA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.63 | ABZR86_RS08100 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.36 | ABZR86_RS09460 | | cysteine desulfurase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS07640 | | ribosomal protein S12 methylthiotransferase | 0.20 | RR42_RS21580 | | cysteine desulfurase | low | > 128 |
| Shewanella oneidensis MR-1 | 0.63 | SO4072 | yliG | MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) | 0.41 | SO3789 | | aminotransferase, class V (NCBI ptt file) | low | > 76 |
| Sphingomonas koreensis DSMZ 15582 | 0.62 | Ga0059261_0282 | | ribosomal protein S12 methylthiotransferase RimO | 0.36 | Ga0059261_1475 | | cysteine desulfurases, SufSfamily | — | — |
| Dinoroseobacter shibae DFL-12 | 0.61 | Dshi_2618 | | MiaB-like tRNA modifying enzyme YliG (RefSeq) | 0.37 | Dshi_1623 | | cysteine desulfurase, SufS subfamily (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c24370 | | ribosomal protein S12 methylthiotransferase RimO | 0.38 | PGA1_c15430 | | cysteine desulfurase SufS | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.30 | CA264_15685 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.36 | CA264_08285 | | aminotransferase | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.30 | Echvi_0564 | | ribosomal protein S12 methylthiotransferase RimO | 0.39 | Echvi_3061 | | cysteine desulfurases, SufS subfamily | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.29 | BT0913 | | putative Fe-S oxidoreductase (NCBI ptt file) | 0.40 | BT3409 | | aminotransferase, putative cysteine desulfurase (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_00737 | | ribosomal protein S12 methylthiotransferase RimO | 0.39 | BACOVA_01897 | | cysteine desulfurase, SufS subfamily | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.29 | HMPREF1058_RS04095 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | HMPREF1058_RS12220 | | cysteine desulfurase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.28 | ABI39_RS17125 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.39 | ABI39_RS04575 | | cysteine desulfurase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.28 | HMPREF1078_RS01815 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.39 | HMPREF1078_RS11845 | | cysteine desulfurase | — | — |
| Bacteroides stercoris CC31F | 0.27 | HMPREF1181_RS16335 | | 30S ribosomal protein S12 methylthiotransferase RimO | 0.40 | HMPREF1181_RS02605 | | cysteine desulfurase | — | — |
Not shown: 25 genomes with orthologs for PS417_05880 only; 14 genomes with orthologs for PS417_06175 only