Conservation of cofitness between GFF668 and GFF1060 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 1.0 GFF1060 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) 0.51 9
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.87 EX28DRAFT_3602 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 76
Enterobacter sp. TBS_079 0.84 MPMX20_01400 Histidine ammonia-lyase 0.87 MPMX20_00699 Soluble lytic murein transglycosylase low > 85
Klebsiella michiganensis M5al 0.82 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.84 BWI76_RS04185 murein transglycosylase low > 92
Pseudomonas simiae WCS417 0.78 PS417_01750 histidine ammonia-lyase 0.22 PS417_07550 lytic transglycosylase low > 88
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS01805 histidine ammonia-lyase 0.21 PFLU_RS07630 transglycosylase SLT domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.78 PFLU_RS01805 histidine ammonia-lyase 0.21 PFLU_RS07630 transglycosylase SLT domain-containing protein low > 109
Serratia liquefaciens MT49 0.77 IAI46_03660 histidine ammonia-lyase 0.64 IAI46_02985 murein transglycosylase low > 86
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS14640 histidine ammonia-lyase 0.12 RR42_RS01405 lytic transglycosylase 0.24 36
Pseudomonas sp. RS175 0.77 PFR28_04971 Histidine ammonia-lyase 0.21 PFR28_01106 Soluble lytic murein transglycosylase low > 88
Pseudomonas sp. S08-1 0.77 OH686_16755 histidine ammonia-lyase 0.23 OH686_21900 Soluble lytic murein transglycosylase low > 80
Pseudomonas putida KT2440 0.77 PP_5032 Histidine ammonia-lyase 0.21 PP_2130 putative Soluble lytic transglycosylase low > 96
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_09600 histidine ammonia-lyase 0.21 AO356_02350 lytic transglycosylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.21 Pf6N2E2_2294 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_12270 histidine ammonia-lyase 0.22 AO353_00530 lytic transglycosylase low > 101
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.21 PfGW456L13_4045 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_4833 histidine ammonia-lyase 0.20 Psyr_3295 SLT low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_4833 histidine ammonia-lyase 0.20 Psyr_3295 SLT low > 86
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.21 Pf1N1B4_3898 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 87
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_06080 histidine ammonia-lyase 0.31 CSW01_03655 murein transglycosylase low > 62
Shewanella oneidensis MR-1 0.67 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) 0.22 SO2040 soluble lytic murein transglycosylase, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_0101 histidine ammonia-lyase (RefSeq) 0.22 Shewana3_2236 lytic transglycosylase, catalytic (RefSeq) low > 73
Shewanella loihica PV-4 0.65 Shew_3756 histidine ammonia-lyase (RefSeq) 0.25 Shew_2125 lytic transglycosylase, catalytic (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.63 MIT1002_00905 Histidine ammonia-lyase 0.18 MIT1002_00576 Soluble lytic murein transglycosylase precursor low > 70
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS23515 histidine ammonia-lyase 0.13 QEN71_RS28635 lytic transglycosylase domain-containing protein 0.37 72
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_1432 histidine ammonia-lyase (EC 4.3.1.3) 0.16 B158DRAFT_1444 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 40
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04873 histidine ammonia-lyase 0.12 H281DRAFT_05816 soluble lytic murein transglycosylase low > 103
Ralstonia solanacearum PSI07 0.57 RPSI07_RS11915 histidine ammonia-lyase 0.12 RPSI07_RS23510 lytic transglycosylase low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.13 BPHYT_RS18610 lytic transglycosylase low > 109
Ralstonia solanacearum GMI1000 0.57 RS_RS13250 histidine ammonia-lyase 0.12 RS_RS00445 lytic transglycosylase low > 80
Paraburkholderia graminis OAS925 0.57 ABIE53_001729 histidine ammonia-lyase 0.13 ABIE53_000044 soluble lytic murein transglycosylase low > 113
Ralstonia solanacearum UW163 0.57 UW163_RS08235 histidine ammonia-lyase 0.12 UW163_RS03720 lytic transglycosylase — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS05390 histidine ammonia-lyase 0.12 RALBFv3_RS09860 lytic transglycosylase low > 76
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01025 histidine ammonia-lyase 0.12 ABZR87_RS04885 lytic transglycosylase domain-containing protein low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF3589 Histidine ammonia-lyase (EC 4.3.1.3) 0.11 GFF1614 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) — —
Variovorax sp. OAS795 0.55 ABID97_RS03420 histidine ammonia-lyase 0.11 ABID97_RS06595 transglycosylase SLT domain-containing protein low > 91
Rahnella sp. WP5 0.55 EX31_RS06755 histidine ammonia-lyase 0.62 EX31_RS03985 murein transglycosylase 0.23 35
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.59 DDA3937_RS18455 murein transglycosylase low > 74
Variovorax sp. SCN45 0.54 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) 0.11 GFF5163 Soluble lytic murein transglycosylase (EC 4.2.2.n1) low > 127
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.58 HGI48_RS18385 murein transglycosylase low > 71
Pantoea sp. MT58 0.54 IAI47_13275 histidine ammonia-lyase 0.64 IAI47_16260 murein transglycosylase low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS15835 histidine ammonia-lyase 0.58 DZA65_RS19525 murein transglycosylase low > 75
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) 0.15 Xcc-8004.961.1 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) low > 74
Shewanella amazonensis SB2B 0.39 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.25 Sama_1895 soluble lytic murein transglycosylase, putative (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.29 LRK55_RS01065 aromatic amino acid lyase 0.16 LRK55_RS06980 transglycosylase SLT domain-containing protein low > 63
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS06750 histidine ammonia-lyase 0.17 ABZR86_RS12745 transglycosylase SLT domain-containing protein low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS01300 aromatic amino acid ammonia-lyase 0.16 LRK54_RS07245 transglycosylase SLT domain-containing protein low > 59
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_05610 hutH histidine ammonia-lyase 0.15 OKGIIK_16395 Lytic transglycosylase low > 52
Lysobacter sp. OAE881 0.28 ABIE51_RS13345 aromatic amino acid lyase 0.15 ABIE51_RS19070 transglycosylase SLT domain-containing protein low > 62
Escherichia coli ECOR38 0.20 HEPCGN_01360 histidine ammonia-lyase 0.91 HEPCGN_09175 sltY murein transglycosylase low > 85
Pseudomonas stutzeri RCH2 0.20 Psest_3695 Histidine ammonia-lyase 0.22 Psest_1844 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) low > 67

Not shown: 25 genomes with orthologs for GFF668 only; 16 genomes with orthologs for GFF1060 only