Conservation of cofitness between EX31_RS14255 and EX31_RS14240 in Rahnella sp. WP5

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS14240 ATP-dependent protease subunit HslV 0.48 14
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.95 IAI46_24570 ATP-dependent protease subunit HslV low > 86
Pectobacterium carotovorum WPP14 0.93 HER17_RS00840 ribonuclease E activity regulator RraA 0.95 HER17_RS00855 ATP-dependent protease subunit HslV low > 75
Erwinia tracheiphila SCR3 0.93 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.93 LU632_RS19670 hslV ATP-dependent protease subunit HslV low > 74
Escherichia coli ECRC98 0.93 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.93 JDDGAC_17360 hslV ATP-dependent protease subunit HslV low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.94 ECOLIN_RS22640 ATP-dependent protease subunit HslV low > 55
Escherichia fergusonii Becca 0.93 EFB2_04689 Regulator of ribonuclease activity A 0.94 EFB2_04686 ATP-dependent protease subunit HslV low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.94 OHPLBJKB_04119 ATP-dependent protease subunit HslV low > 73
Escherichia coli ECRC100 0.93 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.93 OKFHMN_13735 hslV ATP-dependent protease subunit HslV low > 80
Escherichia coli ECRC102 0.93 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.93 NIAGMN_11490 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECOR27 0.93 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.93 NOLOHH_05880 hslV ATP-dependent protease subunit HslV low > 75
Escherichia coli ECOR38 0.93 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.93 HEPCGN_12380 hslV ATP-dependent protease subunit HslV low > 87
Escherichia coli ECRC99 0.93 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.93 KEDOAH_14425 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECRC62 0.93 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.92 BNILDI_05650 hslV ATP-dependent protease subunit HslV low > 75
Escherichia coli BL21 0.93 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.94 ECD_03817 peptidase component of the HslUV protease low > 61
Escherichia coli ECRC101 0.93 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.93 MCAODC_04235 hslV ATP-dependent protease subunit HslV low > 87
Escherichia coli BW25113 0.93 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.94 b3932 hslV ATP-dependent protease peptidase subunit (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF2311 Ribonuclease E inhibitor RraA 0.80 GFF2314 ATP-dependent protease HslV (EC 3.4.25.-) low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_04540 Regulator of ribonuclease activity A 0.92 MPMX20_04537 ATP-dependent protease subunit HslV low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS00740 ribonuclease E activity regulator RraA 0.95 BWI76_RS00755 ATP-dependent protease subunit HslV low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_4402 regulator of ribonuclease activity A 0.92 EX28DRAFT_4405 ATP-dependent protease HslVU, peptidase subunit low > 76
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.96 HGI48_RS20455 ATP-dependent protease subunit HslV low > 71
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.96 DDA3937_RS00920 ATP-dependent protease subunit HslV low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.96 DZA65_RS21500 ATP-dependent protease subunit HslV low > 75
Pantoea sp. MT58 0.82 IAI47_00840 ribonuclease E activity regulator RraA 0.92 IAI47_00850 ATP-dependent protease subunit HslV low > 76
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.76 SO4162 hslV ATP-dependent protease HslV (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.76 Shewana3_3699 ATP-dependent protease peptidase subunit (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_13500 ribonuclease E activity regulator RraA 0.82 CSW01_13515 HslU--HslV peptidase proteolytic subunit low > 62
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.82 Sama_0441 ATP-dependent protease peptidase subunit (RefSeq) low > 62
Shewanella loihica PV-4 0.70 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.81 Shew_0375 ATP-dependent protease peptidase subunit (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.72 MIT1002_03660 ATP-dependent protease subunit HslV low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.69 Psest_3936 ATP-dependent protease HslVU, peptidase subunit 0.25 9
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.74 AO353_12430 ATP-dependent protease subunit HslV — —
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.69 OH686_10095 ATP-dependent protease HslVU, peptidase subunit low > 80
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.70 PP_5000 peptidase component of the ATP-dependent HslVU protease low > 96
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.68 PFR28_04999 ATP-dependent protease subunit HslV — —
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.67 Pf6N2E2_3769 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.67 AO356_09455 ATP-dependent protease subunit HslV low > 104
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.74 Pf1N1B4_1552 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.68 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B low > 86
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.74 PFLU_RS01965 ATP-dependent protease subunit HslV low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.68 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B low > 86
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.74 PFLU_RS01965 ATP-dependent protease subunit HslV low > 109
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.74 PS417_01920 ATP-dependent protease subunit HslV low > 88
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.67 PfGW456L13_289 ATP-dependent protease HslV (EC 3.4.25.-) — —
Marinobacter adhaerens HP15 0.48 HP15_2228 ribonuclease activity regulator protein RraA 0.76 HP15_466 ATP-dependent protease peptidase subunit low > 73
Dechlorosoma suillum PS 0.43 Dsui_0010 RraA family protein 0.70 Dsui_0581 ATP-dependent protease HslVU, peptidase subunit low > 51
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06240 ribonuclease E activity regulator RraA 0.64 QEN71_RS00335 ATP-dependent protease subunit HslV low > 153
Lysobacter sp. OAE881 0.42 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.57 ABIE51_RS03040 ATP-dependent protease subunit HslV — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.69 Ac3H11_2004 ATP-dependent protease HslV (EC 3.4.25.-) low > 79
Azospirillum brasilense Sp245 0.41 AZOBR_RS17130 ribonuclease 0.61 AZOBR_RS01655 peptidase — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.61 ABZR87_RS05115 ATP-dependent protease subunit HslV low > 80
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10555 ribonuclease 0.64 HSERO_RS00910 peptidase low > 78
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.61 RPSI07_RS23735 ATP-dependent protease subunit HslV low > 81
Ralstonia solanacearum UW163 0.39 UW163_RS13460 ribonuclease 0.61 UW163_RS03950 ATP-dependent protease subunit HslV — —
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS00130 ribonuclease 0.61 RALBFv3_RS09630 ATP-dependent protease subunit HslV low > 76
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.71 GFF4484 ATP-dependent protease subunit HslV (EC 3.4.25.2) — —
Azospirillum sp. SherDot2 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.55 MPMX19_02548 ATP-dependent protease subunit HslV low > 112
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12315 ribonuclease 0.64 BPHYT_RS01635 ATP-dependent protease subunit HslV — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS12215 ribonuclease 0.66 RR42_RS01060 peptidase low > 128
Ralstonia solanacearum GMI1000 0.37 RS_RS06790 ribonuclease E inhibitor RraA 0.61 RS_RS00215 HslU--HslV peptidase proteolytic subunit low > 80

Not shown: 3 genomes with orthologs for EX31_RS14255 only; 27 genomes with orthologs for EX31_RS14240 only