Conservation of cofitness between ECD_02122 and ECD_03348 in Escherichia coli BL21

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02122 periplasmic thioredoxin of cytochrome c-type biogenesis 1.0 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.38 17
Escherichia fergusonii Becca 1.00 EFB2_01661 Thiol:disulfide interchange protein DsbE 1.00 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli ECOR27 1.00 NOLOHH_14885 dsbE thiol:disulfide interchange protein DsbE 1.00 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC99 1.00 KEDOAH_04875 dsbE thiol:disulfide interchange protein DsbE 0.99 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 1.00 MCAODC_14360 dsbE thiol:disulfide interchange protein DsbE 0.99 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC62 1.00 BNILDI_13805 dsbE thiol:disulfide interchange protein DsbE 1.00 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 1.00 OKFHMN_23310 dsbE thiol:disulfide interchange protein DsbE 0.99 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12830 thiol:disulfide interchange protein DsbE 1.00 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BW25113 1.00 b2195 ccmG periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) 0.99 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01516 Thiol:disulfide interchange protein DsbE 0.99 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli ECRC102 1.00 NIAGMN_21075 dsbE thiol:disulfide interchange protein DsbE 0.99 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC98 1.00 JDDGAC_27270 dsbE thiol:disulfide interchange protein DsbE 0.99 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECOR38 1.00 HEPCGN_22575 dsbE thiol:disulfide interchange protein DsbE 0.99 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4876 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.95 GFF515 Protein involved in catabolism of external DNA — —
Pantoea sp. MT58 0.75 IAI47_06095 DsbE family thiol:disulfide interchange protein 0.81 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Pectobacterium carotovorum WPP14 0.74 HER17_RS09060 DsbE family thiol:disulfide interchange protein 0.82 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 45
Serratia liquefaciens MT49 0.73 IAI46_18080 DsbE family thiol:disulfide interchange protein 0.85 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_10260 thiol:disulfide interchange protein DsbE 0.65 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Rahnella sp. WP5 0.68 EX31_RS19740 DsbE family thiol:disulfide interchange protein 0.87 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Pseudomonas putida KT2440 0.50 PP_4321 holocytochrome c synthetase subunit 0.45 PP_4945 23S rRNA m(6)A2030 methyltransferase — —
Pseudomonas stutzeri RCH2 0.47 Psest_1760 periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 0.43 Psest_0408 Protein involved in catabolism of external DNA — —
Shewanella oneidensis MR-1 0.47 SO0267 dsbE thiol:disulfide interchange protein DsbE (NCBI ptt file) 0.49 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.47 Sama_0249 thiol:disulfide interchange protein DsbE (RefSeq) 0.50 Sama_3563 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.47 Shewana3_0235 periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq) 0.49 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_3387 Periplasmic protein thiol:disulfide oxidoreductase DsbE 0.40 Psyr_4772 Protein of unknown function DUF519 — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_3387 Periplasmic protein thiol:disulfide oxidoreductase DsbE 0.40 Psyr_4772 Protein of unknown function DUF519 — —
Shewanella loihica PV-4 0.46 Shew_0194 periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq) 0.51 Shew_3648 hypothetical protein (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS08675 DsbE family thiol:disulfide interchange protein 0.41 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS08675 DsbE family thiol:disulfide interchange protein 0.41 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas simiae WCS417 0.45 PS417_08720 thiol:disulfide interchange protein 0.41 PS417_02200 lactate dehydrogenase — —
Marinobacter adhaerens HP15 0.44 HP15_2280 periplasmic protein thiol: disulfide oxidoreductase DsbE 0.31 HP15_2563 protein containing DUF519 — —
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_4310 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.41 PfGW456L13_219 Protein involved in catabolism of external DNA — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_2554 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.41 Pf6N2E2_3679 Protein involved in catabolism of external DNA — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_03630 thiol:disulfide interchange protein 0.41 AO356_08990 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_18880 thiol:disulfide interchange protein 0.41 AO353_12840 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3645 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.41 Pf1N1B4_1481 Protein involved in catabolism of external DNA — —
Pseudomonas sp. S08-1 0.40 OH686_02630 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.42 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Pseudomonas sp. RS175 0.40 PFR28_00871 Thiol:disulfide interchange protein DsbE 0.42 PFR28_05056 Ribosomal RNA large subunit methyltransferase J — —
Lysobacter sp. OAE881 0.37 ABIE51_RS08695 DsbE family thiol:disulfide interchange protein 0.33 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS06450 DsbE family thiol:disulfide interchange protein 0.38 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.2341.1 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase 0.38 Xcc-8004.1778.1 Protein involved in catabolism of external DNA — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS16060 DsbE family thiol:disulfide interchange protein 0.37 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c18860 thiol:disulfide interchange protein CcmG 0.32 PGA1_c26480 Protein involved in catabolism of external DNA — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS00745 thiol oxidoreductase DsbE 0.47 AZOBR_RS21900 lactate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS15810 DsbE family thiol:disulfide interchange protein 0.37 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Azospirillum sp. SherDot2 0.35 MPMX19_02534 Thiol:disulfide interchange protein DsbE 0.44 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J — —
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_08590 bcp DsbE family thiol:disulfide interchange protein 0.38 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Alteromonas macleodii MIT1002 0.34 MIT1002_00966 Cytochrome c biogenesis protein CcmG 0.34 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J — —
Rhodospirillum rubrum S1H 0.32 Rru_A0034 Periplasmic protein thiol-disulfide oxidoreductase DsbE (NCBI) 0.37 Rru_A1938 Protein of unknown function DUF519 (NCBI) — —
Caulobacter crescentus NA1000 0.32 CCNA_03788 thiol:disulfide interchange protein tlpA 0.26 CCNA_01152 external DNA uptake/catabolism protein low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03788 thiol:disulfide interchange protein tlpA 0.26 CCNA_01152 external DNA uptake/catabolism protein low > 67
Rhizobium sp. OAE497 0.32 ABIE40_RS18300 DsbE family thiol:disulfide interchange protein 0.42 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 107
Sinorhizobium meliloti 1021 0.30 SMc03851 thiol:disulfide interchange protein (cytochrome C biogenesis protein) 0.42 SMc00608 hypothetical protein — —
Agrobacterium fabrum C58 0.29 Atu2690 thiol:disulfide interchange protein 0.41 Atu1135 hypothetical protein — —
Magnetospirillum magneticum AMB-1 0.29 AMB_RS21255 DsbE family thiol:disulfide interchange protein 0.44 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12795 DsbE family thiol:disulfide interchange protein 0.22 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Bosea sp. OAE506 0.27 ABIE41_RS04995 DsbE family thiol:disulfide interchange protein 0.36 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 77
Rhodopseudomonas palustris CGA009 0.26 TX73_001070 DsbE family thiol:disulfide interchange protein 0.35 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Paraburkholderia graminis OAS925 0.16 ABIE53_003565 thiol-disulfide isomerase/thioredoxin 0.43 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113

Not shown: 4 genomes with orthologs for ECD_02122 only; 22 genomes with orthologs for ECD_03348 only