Conservation of cofitness between ECD_02836 and ECD_03033 in Escherichia coli BL21

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02836 putative type II secretion protein GspF 1.0 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.91 15
Escherichia fergusonii Becca 1.00 EFB2_00847 Type II secretion system protein F 1.00 EFB2_00657 tRNA pseudouridine synthase B low > 86
Escherichia coli ECOR27 0.99 NOLOHH_10985 gspF general secretion pathway protein F 1.00 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 57
Escherichia coli Nissle 1917 0.99 ECOLIN_RS17075 type II secretion system inner membrane protein GspF 1.00 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 52
Escherichia coli ECOR38 0.99 HEPCGN_18060 gspF general secretion pathway protein F 1.00 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_00741 Type II secretion system protein F 1.00 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13780 type II secretion system protein GspF 0.67 CSW01_03400 tRNA pseudouridine(55) synthase TruB — —
Shewanella sp. ANA-3 0.54 Shewana3_0153 general secretion pathway protein F (RefSeq) 0.63 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Shewanella loihica PV-4 0.54 Shew_3617 general secretion pathway protein F (RefSeq) 0.60 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Klebsiella michiganensis M5al 0.53 BWI76_RS05080 type II secretion protein F 0.91 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Dickeya dianthicola 67-19 0.53 HGI48_RS14725 type II secretion system inner membrane protein GspF 0.76 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS15670 type II secretion system inner membrane protein GspF 0.75 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dadantii 3937 0.53 DDA3937_RS14790 type II secretion system inner membrane protein GspF 0.77 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Shewanella amazonensis SB2B 0.53 Sama_0171 general secretion pathway protein F (RefSeq) 0.66 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Escherichia coli ECRC101 0.52 OKFHMN_00275 gspF type II secretion system inner membrane protein GspF 1.00 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.52 JDDGAC_30305 gspF type II secretion system inner membrane protein GspF 1.00 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC102 0.52 NIAGMN_28595 gspF type II secretion system inner membrane protein GspF 1.00 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.52 MCAODC_15275 gspF type II secretion system inner membrane protein GspF 1.00 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB — —
Alteromonas macleodii MIT1002 0.52 MIT1002_03978 General secretion pathway protein F 0.49 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Pectobacterium carotovorum WPP14 0.51 HER17_RS06695 type II secretion system inner membrane protein GspF 0.78 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0691 general secretion pathway protein F 0.51 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40
Pseudomonas stutzeri RCH2 0.44 Psest_4201 general secretion pathway protein F 0.50 Psest_0983 tRNA pseudouridine 55 synthase — —
Marinobacter adhaerens HP15 0.43 HP15_1603 general secretion pathway protein F 0.48 HP15_3065 tRNA pseudouridine synthase B low > 73
Acinetobacter radioresistens SK82 0.40 MPMX26_00283 Type II secretion system protein F 0.39 MPMX26_02778 tRNA pseudouridine synthase B low > 36
Pseudomonas sp. S08-1 0.40 OH686_11780 type II secretion system protein F 0.48 OH686_17155 tRNA pseudouridine(55) synthase — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_12555 type II secretion system protein GspF 0.49 AO353_05550 pseudouridine synthase low > 101
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_264 General secretion pathway protein F 0.49 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_09335 type II secretion system protein GspF 0.49 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3744 General secretion pathway protein F 0.49 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS19605 general secretion pathway protein F 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B low > 109
Paraburkholderia graminis OAS925 0.35 ABIE53_000298 general secretion pathway protein F 0.40 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_02354 general secretion pathway protein F 0.39 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS03460 type II secretion system inner membrane protein GspF 0.37 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS29520 type II secretion system inner membrane protein GspF 0.40 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Ralstonia solanacearum GMI1000 0.34 RS_RS15650 type II secretion system protein GspF 0.39 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS07755 type II secretion system protein GspF 0.38 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS05870 type II secretion system protein GspF 0.38 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas simiae WCS417 0.34 PS417_11305 general secretion pathway protein GspF 0.48 PS417_23960 pseudouridine synthase — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS09505 type II secretion system protein GspF 0.38 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.944.1 General secretion pathway protein F 0.36 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 74
Pseudomonas fluorescens SBW25 0.34 PFLU_RS11900 type II secretion system protein GspF 0.49 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS11900 type II secretion system protein GspF 0.49 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_3953 Type II secretory pathway, component PulF 0.24 Ga0059261_2142 tRNA pseudouridine(55) synthase low > 68
Pseudomonas sp. RS175 0.32 PFR28_01752 Type II secretion system protein F 0.49 PFR28_00092 tRNA pseudouridine synthase B — —
Variovorax sp. OAS795 0.31 ABID97_RS06940 type II secretion system inner membrane protein GspF 0.36 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB low > 91
Variovorax sp. SCN45 0.31 GFF102 General secretion pathway protein F 0.35 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_4054 General secretion pathway protein F / Type II secretory pathway, component PulF 0.35 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.54 31
Caulobacter crescentus NA1000 0.31 CCNA_00174 type II secretion pathway protein F 0.28 CCNA_00035 tRNA pseudouridine synthase B low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00174 type II secretion pathway protein F 0.28 CCNA_00035 tRNA pseudouridine synthase B low > 67
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2841 Type IV fimbrial assembly protein PilC 0.49 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0797 type II secretion system protein 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0797 type II secretion system protein 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Dechlorosoma suillum PS 0.27 Dsui_1319 type II secretory pathway, component PulF 0.43 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Lysobacter sp. OAE881 0.26 ABIE51_RS04810 type II secretion system F family protein 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB low > 62
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2069 pilC fimbrial assembly protein PilC-like 0.23 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1271 general secretion pathway protein F, putative (TIGR) 0.21 DVU0505 truB tRNA pseudouridine synthase B (TIGR) low > 55

Not shown: 3 genomes with orthologs for ECD_02836 only; 28 genomes with orthologs for ECD_03033 only