Conservation of cofitness between ECD_00008 and ECD_02776 in Escherichia coli BL21

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00008 transaldolase B 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.61 5
Escherichia coli ECOR27 1.00 NOLOHH_03410 transaldolase B 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03652 Transaldolase 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 73
Escherichia coli ECRC99 1.00 KEDOAH_17075 transaldolase B 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli ECRC100 1.00 OKFHMN_11080 transaldolase B 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli BW25113 1.00 b0008 talB transaldolase B (NCBI) 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC101 1.00 MCAODC_01595 transaldolase B 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli ECRC98 1.00 JDDGAC_14675 transaldolase B 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Escherichia coli ECRC62 1.00 BNILDI_08195 transaldolase B 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli ECRC102 1.00 NIAGMN_08930 transaldolase B 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS00045 transaldolase 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 55
Escherichia coli ECOR38 1.00 HEPCGN_09085 transaldolase B 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Escherichia fergusonii Becca 1.00 EFB2_04035 Transaldolase B 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Klebsiella michiganensis M5al 0.96 BWI76_RS04270 transaldolase 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF1083 Transaldolase (EC 2.2.1.2) 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Enterobacter sp. TBS_079 0.96 MPMX20_00716 Transaldolase B 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Enterobacter asburiae PDN3 0.96 EX28DRAFT_3620 transaldolase 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.57 55
Pectobacterium carotovorum WPP14 0.92 HER17_RS02815 transaldolase 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dianthicola ME23 0.92 DZA65_RS19465 transaldolase 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dadantii 3937 0.92 DDA3937_RS18395 transaldolase 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Serratia liquefaciens MT49 0.91 IAI46_03055 transaldolase 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Dickeya dianthicola 67-19 0.91 HGI48_RS18325 transaldolase 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Pantoea sp. MT58 0.90 IAI47_16195 transaldolase 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Rahnella sp. WP5 0.90 EX31_RS03920 transaldolase 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Erwinia tracheiphila SCR3 0.88 LU632_RS02630 tal transaldolase 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_17325 transaldolase 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Shewanella sp. ANA-3 0.71 Shewana3_3147 transaldolase B (RefSeq) 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO3546 tal transaldolase (NCBI ptt file) 0.68 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.70 Sama_0913 transaldolase B (RefSeq) 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) — —
Shewanella loihica PV-4 0.70 Shew_1089 transaldolase B (RefSeq) 0.65 Shew_3224 hypothetical protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.69 MIT1002_03080 Transaldolase B 0.45 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E — —
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS12545 transaldolase 0.38 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Lysobacter sp. OAE881 0.63 ABIE51_RS02125 transaldolase 0.35 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS07805 transaldolase 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS07805 transaldolase 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas simiae WCS417 0.61 PS417_07730 transaldolase 0.41 PS417_26545 16S rRNA methyltransferase — —
Pseudomonas stutzeri RCH2 0.58 Psest_2708 transaldolase 0.40 Psest_0305 RNA methyltransferase, RsmE family low > 67
Pseudomonas putida KT2440 0.57 PP_2168 Transaldolase 0.41 PP_4985 16S rRNA m3U1498 methyltransferase low > 96
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00310 transaldolase 0.42 AO353_08050 16S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1914 transaldolase 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1914 transaldolase 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Rhizobium sp. OAE497 0.56 ABIE40_RS16940 transaldolase 0.17 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Marinobacter adhaerens HP15 0.55 HP15_2241 transaldolase 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E low > 73
Pseudomonas sp. S08-1 0.55 OH686_22740 transaldolase 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_2258 Transaldolase (EC 2.2.1.2) 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 103
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS05500 transaldolase 0.29 HSERO_RS07110 16S rRNA methyltransferase low > 78
Pseudomonas sp. RS175 0.54 PFR28_01142 Transaldolase 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E low > 88
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4009 Transaldolase (EC 2.2.1.2) 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02175 transaldolase 0.41 AO356_13565 16S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_58 Transaldolase (EC 2.2.1.2) 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11000 transaldolase 0.33 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Acidovorax sp. GW101-3H11 0.52 Ac3H11_2059 Transaldolase (EC 2.2.1.2) 0.32 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1363 Transaldolase (EC 2.2.1.2) 0.29 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 90
Variovorax sp. SCN45 0.51 GFF5266 Transaldolase (EC 2.2.1.2) 0.30 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) low > 127
Paraburkholderia graminis OAS925 0.51 ABIE53_001416 transaldolase 0.32 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00286 transaldolase 0.33 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06045 transaldolase 0.34 BPHYT_RS16855 16S rRNA methyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS24595 transaldolase 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 153
Castellaniella sp019104865 MT123 0.49 ABCV34_RS15500 transaldolase 0.27 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 48
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.4226.1 Transaldolase (EC 2.2.1.2) 0.37 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Acinetobacter radioresistens SK82 0.47 MPMX26_01753 Transaldolase 0.35 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E low > 36

Not shown: 1 genomes with orthologs for ECD_00008 only; 39 genomes with orthologs for ECD_02776 only