Conservation of cofitness between ECD_00741 and ECD_02768 in Escherichia coli BL21

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 1.0 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.54 11
Escherichia coli ECRC62 0.99 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 BNILDI_09755 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC101 0.99 MCAODC_25620 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 MCAODC_09825 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC101 0.99 OKFHMN_06405 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 OKFHMN_19305 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC99 0.99 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR27 0.99 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 57
Escherichia coli ECRC102 0.99 NIAGMN_04450 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC98 0.99 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 JDDGAC_22935 speA biosynthetic arginine decarboxylase — —
Escherichia coli BW25113 0.99 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 1.00 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.00 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia fergusonii Becca 0.99 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.00 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 1.00 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF670 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.94 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Klebsiella michiganensis M5al 0.87 BWI76_RS08755 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.95 BWI76_RS24030 arginine decarboxylase low > 92
Enterobacter sp. TBS_079 0.86 MPMX20_01402 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.95 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_2217 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.95 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Dickeya dadantii 3937 0.76 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.88 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Serratia liquefaciens MT49 0.75 IAI46_06520 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.88 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Dickeya dianthicola 67-19 0.75 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.87 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Dickeya dianthicola ME23 0.75 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.87 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Pectobacterium carotovorum WPP14 0.74 HER17_RS13465 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.86 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Erwinia tracheiphila SCR3 0.74 LU632_RS09125 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.88 LU632_RS05510 speA biosynthetic arginine decarboxylase — —
Rahnella sp. WP5 0.73 EX31_RS23690 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.87 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Pantoea sp. MT58 0.73 IAI47_13535 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.87 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_05640 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.51 CSW01_18235 arginine decarboxylase low > 62
Alteromonas macleodii MIT1002 0.63 MIT1002_01378 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.33 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70
Parabacteroides merdae CL09T00C40 0.61 HMPREF1078_RS15295 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.40 HMPREF1078_RS15005 biosynthetic arginine decarboxylase low > 61
Phocaeicola dorei CL03T12C01 0.59 ABI39_RS14245 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.39 ABI39_RS04690 biosynthetic arginine decarboxylase low > 72
Phocaeicola vulgatus CL09T03C04 0.59 HMPREF1058_RS17955 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.39 HMPREF1058_RS12110 biosynthetic arginine decarboxylase low > 67
Shewanella loihica PV-4 0.56 Shew_1718 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.53 Shew_1619 arginine decarboxylase (RefSeq) — —
Shewanella sp. ANA-3 0.56 Shewana3_2520 aminotransferase (RefSeq) 0.54 Shewana3_1624 arginine decarboxylase (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO2741 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (NCBI ptt file) 0.54 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.51 Sama_1437 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.53 Sama_1963 arginine decarboxylase (RefSeq) — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS10225 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.41 ABZR86_RS15580 biosynthetic arginine decarboxylase — —
Rhodanobacter denitrificans MT42 0.37 LRK55_RS03920 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.41 LRK55_RS08900 arginine decarboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS04150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.39 LRK54_RS09140 arginine decarboxylase — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_11015 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.41 OKGIIK_15625 speA biosynthetic arginine decarboxylase — —
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_1002 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.33 DvMF_1536 arginine decarboxylase (RefSeq) low > 51
Pseudomonas sp. S08-1 0.35 OH686_10850 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.40 OH686_07545 arginine decarboxylase low > 80
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.39 AO353_13720 arginine decarboxylase low > 101
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.40 Psyr_4381 arginine decarboxylase 0.47 26
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.40 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.39 AO356_08155 arginine decarboxylase low > 104
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas putida KT2440 0.34 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.40 PP_0567 Biosynthetic arginine decarboxylase low > 96
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.40 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_0179 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.50 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) — —
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Pseudomonas stutzeri RCH2 0.34 Psest_0306 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.40 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Pseudomonas sp. RS175 0.34 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.40 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Pseudomonas fluorescens SBW25 0.34 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas simiae WCS417 0.33 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.39 PS417_03005 arginine decarboxylase low > 88
Marinobacter adhaerens HP15 0.33 HP15_2925 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.51 HP15_272 biosynthetic arginine decarboxylase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.1559.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.43 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Lysobacter sp. OAE881 0.32 ABIE51_RS05265 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.42 ABIE51_RS00125 arginine decarboxylase — —
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0031 bioA aminotransferase 0.37 Synpcc7942_1037 speA arginine decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU2559 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (TIGR) 0.33 DVU0417 speA arginine decarboxylase (TIGR) low > 55

Not shown: 38 genomes with orthologs for ECD_00741 only; 3 genomes with orthologs for ECD_02768 only